Variant report

Variant	rs2152084
Chromosome Location	chr13:54759982-54759983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:54758846..54760838-chr13:54765685..54768244,2	K562	blood:
2	chr13:54759630..54760543-chr13:55804447..55805083,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12427903	0.96[EUR][1000 genomes]
rs12429828	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429973	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12430260	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1335981	1.00[ASN][1000 genomes]
rs1414543	1.00[ASN][1000 genomes]
rs1577577	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17089302	0.92[AFR][1000 genomes]
rs17089308	0.92[AFR][1000 genomes]
rs17089310	0.92[AFR][1000 genomes]
rs17604306	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17667588	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17667614	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1855847	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889824	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960782	0.93[EUR][1000 genomes]
rs1984140	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984141	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065822	0.93[EUR][1000 genomes]
rs2576122	0.93[EUR][1000 genomes]
rs2576124	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576125	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576126	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576127	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576128	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576129	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576131	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2576135	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576136	0.93[EUR][1000 genomes]
rs2576147	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2784555	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784556	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784559	0.89[EUR][1000 genomes]
rs2784560	0.93[EUR][1000 genomes]
rs2784561	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784562	0.93[EUR][1000 genomes]
rs2784564	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784566	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2784567	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784568	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784569	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784572	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883886	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4883887	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4884928	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs564930	0.85[AMR][1000 genomes]
rs57804893	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58112675	0.87[AFR][1000 genomes]
rs60572618	0.87[AFR][1000 genomes]
rs682930	0.83[EUR][1000 genomes]
rs684299	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs795647	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs795649	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs878942	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs933101	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs988527	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988528	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54757000-54760600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:54757200-54760600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:54757400-54761000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:54757400-54761200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:54757600-54761200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:54757800-54760400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr13:54758000-54760200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:54758000-54760600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:54759200-54760200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:54759400-54760200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:54759400-54760600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr13:54759400-54761000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr13:54759600-54760000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:54759600-54763400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr13:54759800-54760400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr13:54759800-54760800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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