Variant report

Variant	rs12427903
Chromosome Location	chr13:54733793-54733794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12429828	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12429973	0.80[EUR][1000 genomes]
rs12430260	0.92[EUR][1000 genomes]
rs1335977	0.82[AMR][1000 genomes]
rs1577576	0.80[AMR][1000 genomes]
rs1577577	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17604306	0.92[EUR][1000 genomes]
rs17667588	0.89[EUR][1000 genomes]
rs17667614	0.89[EUR][1000 genomes]
rs1855847	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1889824	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1960782	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1984140	0.97[EUR][1000 genomes]
rs1984141	0.97[EUR][1000 genomes]
rs2050378	0.97[EUR][1000 genomes]
rs2065822	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2152084	0.96[EUR][1000 genomes]
rs2576122	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2576124	0.97[EUR][1000 genomes]
rs2576125	0.97[EUR][1000 genomes]
rs2576126	0.97[EUR][1000 genomes]
rs2576127	0.97[EUR][1000 genomes]
rs2576128	0.95[EUR][1000 genomes]
rs2576129	0.97[EUR][1000 genomes]
rs2576131	0.97[EUR][1000 genomes]
rs2576135	0.88[EUR][1000 genomes]
rs2576136	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2576147	0.93[EUR][1000 genomes]
rs2784555	0.92[EUR][1000 genomes]
rs2784556	0.91[EUR][1000 genomes]
rs2784559	0.93[EUR][1000 genomes]
rs2784560	0.97[EUR][1000 genomes]
rs2784561	0.97[EUR][1000 genomes]
rs2784562	0.97[EUR][1000 genomes]
rs2784564	0.97[EUR][1000 genomes]
rs2784566	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2784567	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2784568	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2784569	0.90[EUR][1000 genomes]
rs2784572	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4883886	0.80[EUR][1000 genomes]
rs4883887	0.80[EUR][1000 genomes]
rs4884928	0.87[EUR][1000 genomes]
rs551408	0.80[AMR][1000 genomes]
rs574623	0.80[AMR][1000 genomes]
rs57804893	0.92[EUR][1000 genomes]
rs600930	0.80[AMR][1000 genomes]
rs6561768	0.80[AMR][1000 genomes]
rs667408	0.80[AMR][1000 genomes]
rs681704	0.80[AMR][1000 genomes]
rs7335075	0.82[AMR][1000 genomes]
rs878942	0.97[EUR][1000 genomes]
rs933101	0.93[EUR][1000 genomes]
rs9527179	0.82[AMR][1000 genomes]
rs9568990	0.80[AMR][1000 genomes]
rs988527	0.97[EUR][1000 genomes]
rs988528	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54722600-54736200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:54722600-54741200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:54731200-54739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr13:54733600-54736600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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