Variant report
Variant | rs2576136 |
---|---|
Chromosome Location | chr13:54717555-54717556 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12427903 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12429828 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs12430260 | 0.89[EUR][1000 genomes] |
rs1334874 | 0.83[AMR][1000 genomes] |
rs1335976 | 0.84[AMR][1000 genomes] |
rs1577576 | 0.82[AMR][1000 genomes] |
rs1577577 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17604306 | 0.89[EUR][1000 genomes] |
rs17667588 | 0.87[EUR][1000 genomes] |
rs17667614 | 0.87[EUR][1000 genomes] |
rs1855847 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1889824 | 1.00[EUR][1000 genomes] |
rs1960782 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1984140 | 1.00[EUR][1000 genomes] |
rs1984141 | 1.00[EUR][1000 genomes] |
rs2050378 | 0.95[EUR][1000 genomes] |
rs2065822 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2152084 | 0.93[EUR][1000 genomes] |
rs2576122 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2576124 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2576125 | 1.00[EUR][1000 genomes] |
rs2576126 | 1.00[EUR][1000 genomes] |
rs2576127 | 1.00[EUR][1000 genomes] |
rs2576128 | 0.97[EUR][1000 genomes] |
rs2576129 | 1.00[EUR][1000 genomes] |
rs2576131 | 1.00[EUR][1000 genomes] |
rs2576135 | 0.91[EUR][1000 genomes] |
rs2576147 | 0.92[CEU][hapmap];0.96[EUR][1000 genomes] |
rs2784555 | 0.95[EUR][1000 genomes] |
rs2784556 | 0.93[EUR][1000 genomes] |
rs2784559 | 0.96[EUR][1000 genomes] |
rs2784560 | 1.00[EUR][1000 genomes] |
rs2784561 | 1.00[EUR][1000 genomes] |
rs2784562 | 1.00[EUR][1000 genomes] |
rs2784564 | 1.00[EUR][1000 genomes] |
rs2784566 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2784567 | 0.85[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2784568 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2784569 | 0.92[EUR][1000 genomes] |
rs2784572 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4274311 | 0.85[AMR][1000 genomes] |
rs4884928 | 0.84[EUR][1000 genomes] |
rs551408 | 0.82[AMR][1000 genomes] |
rs574623 | 0.82[AMR][1000 genomes] |
rs57804893 | 0.89[EUR][1000 genomes] |
rs600930 | 0.82[AMR][1000 genomes] |
rs6561768 | 0.82[AMR][1000 genomes] |
rs667408 | 0.82[AMR][1000 genomes] |
rs681704 | 0.82[AMR][1000 genomes] |
rs7992992 | 0.85[AMR][1000 genomes] |
rs878942 | 1.00[EUR][1000 genomes] |
rs933101 | 0.92[CEU][hapmap];0.96[EUR][1000 genomes] |
rs9568990 | 0.82[AMR][1000 genomes] |
rs988527 | 1.00[EUR][1000 genomes] |
rs988528 | 0.99[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3375545 | chr13:54517432-54908108 | Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv1049 | chr13:54684354-54728981 | Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv561701 | chr13:54711276-54826104 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:54708600-54718800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
2 | chr13:54714800-54721200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
3 | chr13:54717000-54718600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |