Variant report

Variant	rs17089418
Chromosome Location	chr4:59431820-59431821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17089421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089456	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089474	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089475	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089477	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762438	chr4:58712109-59441414	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1011418	chr4:59081528-59674340	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv879030	chr4:59379696-59548868	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3467877	chr4:59428864-59435643	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3467878	chr4:59428917-59435608	Weak transcription Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv2810	chr4:59428963-59435592	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv3467876	chr4:59428982-59435543	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv3467879	chr4:59428996-59435543	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59430600-59432000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:59431600-59432000	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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