Variant report

Variant	rs17089477
Chromosome Location	chr4:59468494-59468495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17089418	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089421	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089481	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011418	chr4:59081528-59674340	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv879030	chr4:59379696-59548868	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv829945	chr4:59432673-59619034	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv879031	chr4:59434110-59915131	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv594232	chr4:59440585-59484598	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a
6	nsv879032	chr4:59441027-59673650	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv275358	chr4:59461665-59471608	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	nsv1000879	chr4:59467862-59602439	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv537104	chr4:59467862-59602439	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59463400-59469200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:59465400-59469400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:59465600-59469600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:59465800-59470800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:59467200-59470400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:59467600-59468600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:59468200-59469800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:59468200-59470600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:59468400-59470800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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