Variant report

Variant	rs17089687
Chromosome Location	chr4:60403334-60403335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17089688	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17290758	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58721032	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73820191	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7657798	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879050	chr4:60306500-60414423	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879051	chr4:60335008-60442490	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1012748	chr4:60385942-60546407	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1007782	chr4:60385942-60550708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60400400-60403600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:60400400-60403600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:60401200-60403400	Enhancers	GM12878-XiMat	blood
4	chr4:60402800-60403400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:60402800-60403600	Enhancers	Hela-S3	cervix
6	chr4:60403000-60403400	Enhancers	NHEK	skin
7	chr4:60403000-60403800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:60403200-60403400	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:60403200-60403600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:60403200-60403800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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