Variant report

Variant	rs73820191
Chromosome Location	chr4:60418858-60418859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12108266	0.83[AFR][1000 genomes]
rs17089687	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17089688	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17290758	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41447248	0.91[AFR][1000 genomes]
rs4860645	0.89[AFR][1000 genomes]
rs57672361	0.85[AFR][1000 genomes]
rs58721032	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59861149	0.92[AFR][1000 genomes]
rs72633516	0.92[AFR][1000 genomes]
rs72633520	0.91[AFR][1000 genomes]
rs7657798	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879051	chr4:60335008-60442490	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012748	chr4:60385942-60546407	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1007782	chr4:60385942-60550708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1003847	chr4:60406832-60538697	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537107	chr4:60406832-60538697	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60418400-60419000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:60418400-60419200	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:60418600-60419000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:60418600-60419000	Enhancers	A549	lung
5	chr4:60418600-60419200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:60418600-60419200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:60418600-60419200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:60418600-60419200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:60418600-60419200	Enhancers	Hela-S3	cervix
10	chr4:60418600-60419200	Enhancers	NHDF-Ad	bronchial
11	chr4:60418600-60419400	Enhancers	Dnd41	blood
12	chr4:60418800-60419400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr4:60418800-60419400	Enhancers	HSMM	muscle
14	chr4:60418800-60419600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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