Variant report

Variant	rs4860645
Chromosome Location	chr4:60430741-60430742
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10012915	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384459	0.81[EUR][1000 genomes]
rs1384461	0.81[EUR][1000 genomes]
rs17238296	0.81[EUR][1000 genomes]
rs1849525	0.81[EUR][1000 genomes]
rs1996125	0.81[EUR][1000 genomes]
rs41447248	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4860705	0.81[EUR][1000 genomes]
rs56391786	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57033355	0.81[EUR][1000 genomes]
rs57206346	0.81[EUR][1000 genomes]
rs57672361	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59861149	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67001390	0.81[EUR][1000 genomes]
rs67204153	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67295640	0.81[EUR][1000 genomes]
rs67788988	0.81[EUR][1000 genomes]
rs67798807	0.81[EUR][1000 genomes]
rs72633516	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72633517	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633533	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633537	0.81[EUR][1000 genomes]
rs72633540	0.81[EUR][1000 genomes]
rs72633557	0.81[EUR][1000 genomes]
rs72633559	0.81[EUR][1000 genomes]
rs72633561	0.81[EUR][1000 genomes]
rs72633564	0.81[EUR][1000 genomes]
rs73202960	0.81[EUR][1000 genomes]
rs73820191	0.89[AFR][1000 genomes]
rs7439432	0.81[EUR][1000 genomes]
rs988744	0.81[EUR][1000 genomes]
rs9968309	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879051	chr4:60335008-60442490	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012748	chr4:60385942-60546407	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1007782	chr4:60385942-60550708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1003847	chr4:60406832-60538697	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537107	chr4:60406832-60538697	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2760852	chr4:60424576-60863454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60427400-60431200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:60430600-60431800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links