Variant report

Variant	rs4860705
Chromosome Location	chr4:60477757-60477758
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10012915	0.92[EUR][1000 genomes]
rs12108266	0.81[EUR][1000 genomes]
rs1384459	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384460	0.92[EUR][1000 genomes]
rs1384461	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17238296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341828	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41447248	0.81[EUR][1000 genomes]
rs4860645	0.81[EUR][1000 genomes]
rs55996668	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56391786	0.81[EUR][1000 genomes]
rs57033355	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57206346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57672361	0.81[EUR][1000 genomes]
rs67001390	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67204153	0.89[EUR][1000 genomes]
rs67295640	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67788988	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67798807	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633517	0.81[EUR][1000 genomes]
rs72633520	0.81[EUR][1000 genomes]
rs72633533	0.92[EUR][1000 genomes]
rs72633536	0.90[EUR][1000 genomes]
rs72633537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633540	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633559	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72633567	0.92[EUR][1000 genomes]
rs73202960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7435185	0.92[EUR][1000 genomes]
rs7439432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1012748	chr4:60385942-60546407	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007782	chr4:60385942-60550708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1003847	chr4:60406832-60538697	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537107	chr4:60406832-60538697	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2760852	chr4:60424576-60863454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1002303	chr4:60436293-60506680	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv879052	chr4:60458820-60538549	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60476800-60478000	Enhancers	HSMMtube	muscle
2	chr4:60477200-60478400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:60477200-60478600	Enhancers	HMEC	breast
4	chr4:60477200-60478800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:60477400-60478200	Enhancers	NHDF-Ad	bronchial
6	chr4:60477400-60478400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:60477400-60478600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:60477400-60478600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:60477400-60478600	Enhancers	NHEK	skin
10	chr4:60477600-60478400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:60477600-60478600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:60477600-60478600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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