Variant report

Variant	rs7435185
Chromosome Location	chr4:60476957-60476958
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10012915	0.85[EUR][1000 genomes]
rs1384459	0.92[EUR][1000 genomes]
rs1384460	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384461	0.92[EUR][1000 genomes]
rs17238296	0.92[EUR][1000 genomes]
rs1842813	0.86[AFR][1000 genomes]
rs1849525	0.92[EUR][1000 genomes]
rs1996125	0.92[EUR][1000 genomes]
rs2341828	0.90[EUR][1000 genomes]
rs4860705	0.92[EUR][1000 genomes]
rs55996668	0.85[EUR][1000 genomes]
rs57033355	0.92[EUR][1000 genomes]
rs57206346	0.92[EUR][1000 genomes]
rs67001390	0.92[EUR][1000 genomes]
rs67204153	0.83[EUR][1000 genomes]
rs67295640	0.92[EUR][1000 genomes]
rs67788988	0.92[EUR][1000 genomes]
rs67798807	0.92[EUR][1000 genomes]
rs6828465	0.88[AFR][1000 genomes]
rs6842739	0.88[AFR][1000 genomes]
rs6857458	0.88[AFR][1000 genomes]
rs72633533	0.85[EUR][1000 genomes]
rs72633536	0.83[EUR][1000 genomes]
rs72633537	0.92[EUR][1000 genomes]
rs72633540	0.92[EUR][1000 genomes]
rs72633557	0.92[EUR][1000 genomes]
rs72633559	0.92[EUR][1000 genomes]
rs72633561	0.92[EUR][1000 genomes]
rs72633564	0.92[EUR][1000 genomes]
rs72633567	0.85[EUR][1000 genomes]
rs73202960	0.92[EUR][1000 genomes]
rs7439432	0.92[EUR][1000 genomes]
rs7660260	0.89[AFR][1000 genomes]
rs7675400	0.89[AFR][1000 genomes]
rs988744	0.92[EUR][1000 genomes]
rs9968309	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1012748	chr4:60385942-60546407	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007782	chr4:60385942-60550708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1003847	chr4:60406832-60538697	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537107	chr4:60406832-60538697	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2760852	chr4:60424576-60863454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1002303	chr4:60436293-60506680	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv879052	chr4:60458820-60538549	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60474400-60477200	Weak transcription	HMEC	breast
2	chr4:60474400-60477400	Weak transcription	NHEK	skin
3	chr4:60474800-60477600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:60475400-60477200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:60476800-60478000	Enhancers	HSMMtube	muscle

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