Variant report

Variant	rs17090513
Chromosome Location	chr4:62458128-62458129
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1037671	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10517536	1.00[EUR][1000 genomes]
rs11131326	1.00[EUR][1000 genomes]
rs11131332	0.95[AFR][1000 genomes]
rs1350247	1.00[EUR][1000 genomes]
rs1379167	1.00[EUR][1000 genomes]
rs1456867	1.00[EUR][1000 genomes]
rs1456875	1.00[EUR][1000 genomes]
rs1456876	1.00[EUR][1000 genomes]
rs1456877	1.00[EUR][1000 genomes]
rs1456878	1.00[EUR][1000 genomes]
rs1497902	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1497904	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1497917	1.00[TSI][hapmap]
rs1531204	1.00[EUR][1000 genomes]
rs17081925	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs17090502	1.00[EUR][1000 genomes]
rs17090511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17090512	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1845582	1.00[EUR][1000 genomes]
rs2124795	1.00[EUR][1000 genomes]
rs2124796	1.00[EUR][1000 genomes]
rs2219342	1.00[EUR][1000 genomes]
rs2606712	1.00[EUR][1000 genomes]
rs2606714	1.00[EUR][1000 genomes]
rs2606715	1.00[EUR][1000 genomes]
rs2606716	1.00[EUR][1000 genomes]
rs2606717	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2606718	1.00[EUR][1000 genomes]
rs2606720	1.00[EUR][1000 genomes]
rs2643035	1.00[EUR][1000 genomes]
rs2643037	1.00[EUR][1000 genomes]
rs2643038	1.00[EUR][1000 genomes]
rs2643039	1.00[EUR][1000 genomes]
rs2643040	1.00[EUR][1000 genomes]
rs335274	1.00[EUR][1000 genomes]
rs335275	1.00[EUR][1000 genomes]
rs335276	1.00[EUR][1000 genomes]
rs335277	1.00[EUR][1000 genomes]
rs335278	1.00[EUR][1000 genomes]
rs335280	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs335281	1.00[EUR][1000 genomes]
rs335283	1.00[EUR][1000 genomes]
rs335284	1.00[EUR][1000 genomes]
rs335293	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs335297	1.00[EUR][1000 genomes]
rs335298	1.00[EUR][1000 genomes]
rs335326	1.00[EUR][1000 genomes]
rs335327	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs335328	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs335330	1.00[EUR][1000 genomes]
rs335331	1.00[EUR][1000 genomes]
rs335333	1.00[EUR][1000 genomes]
rs335334	1.00[MEX][hapmap]
rs335339	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs335340	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs335343	1.00[EUR][1000 genomes]
rs335344	1.00[EUR][1000 genomes]
rs335345	1.00[EUR][1000 genomes]
rs335346	1.00[EUR][1000 genomes]
rs335347	1.00[EUR][1000 genomes]
rs335348	1.00[EUR][1000 genomes]
rs4860413	1.00[EUR][1000 genomes]
rs60090447	1.00[EUR][1000 genomes]
rs6551630	1.00[EUR][1000 genomes]
rs6814707	1.00[EUR][1000 genomes]
rs6823672	0.84[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6834543	1.00[EUR][1000 genomes]
rs6841033	0.93[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6856328	0.86[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap]
rs7655377	1.00[EUR][1000 genomes]
rs7660777	1.00[EUR][1000 genomes]
rs7683598	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7687816	1.00[TSI][hapmap]
rs7693587	1.00[EUR][1000 genomes]
rs7693679	1.00[EUR][1000 genomes]
rs7698624	1.00[EUR][1000 genomes]
rs9654273	1.00[EUR][1000 genomes]
rs991586	1.00[EUR][1000 genomes]
rs991587	1.00[EUR][1000 genomes]
rs991588	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv594329	chr4:62416593-62478230	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879077	chr4:62419426-62545435	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62446400-62462200	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:62451200-62460600	Weak transcription	Fetal Stomach	stomach
3	chr4:62451200-62465000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:62451400-62460600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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