Variant report

Variant	rs1497917
Chromosome Location	chr4:62416593-62416594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10023159	0.89[ASN][1000 genomes]
rs1037671	1.00[TSI][hapmap]
rs17090513	1.00[TSI][hapmap]
rs2088113	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2606717	1.00[TSI][hapmap]
rs335280	1.00[TSI][hapmap]
rs335293	1.00[TSI][hapmap]
rs335327	1.00[TSI][hapmap]
rs335328	1.00[TSI][hapmap]
rs335339	1.00[TSI][hapmap]
rs335340	1.00[TSI][hapmap]
rs57188639	0.86[ASN][1000 genomes]
rs6841033	1.00[TSI][hapmap]
rs6841637	0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs6856328	1.00[TSI][hapmap]
rs73822651	1.00[ASN][1000 genomes]
rs73822652	1.00[ASN][1000 genomes]
rs73822695	1.00[EUR][1000 genomes]
rs73825906	1.00[EUR][1000 genomes]
rs7660587	0.88[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs7683598	1.00[TSI][hapmap]
rs7687816	1.00[TSI][hapmap]
rs991588	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753138	chr4:62271444-62442507	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1004432	chr4:62408333-62444506	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv537111	chr4:62408333-62444506	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv594329	chr4:62416593-62478230	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62407000-62421600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62408000-62421200	Weak transcription	Fetal Intestine Small	intestine
3	chr4:62409600-62419200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:62415200-62421600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:62416200-62417000	Enhancers	Fetal Heart	heart

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