Variant report
| Variant | rs73825906 |
|---|---|
| Chromosome Location | chr4:62506413-62506414 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12108397 | 0.95[AMR][1000 genomes] |
| rs1497917 | 1.00[EUR][1000 genomes] |
| rs2088113 | 0.80[AMR][1000 genomes] |
| rs55636236 | 0.80[AMR][1000 genomes] |
| rs59130415 | 0.80[AMR][1000 genomes] |
| rs60293956 | 0.80[AMR][1000 genomes] |
| rs60655392 | 0.85[AMR][1000 genomes] |
| rs61350038 | 0.95[AMR][1000 genomes] |
| rs61483832 | 0.80[AMR][1000 genomes] |
| rs73822651 | 0.80[AMR][1000 genomes] |
| rs73822652 | 0.80[AMR][1000 genomes] |
| rs73822688 | 0.80[AMR][1000 genomes] |
| rs73822690 | 0.85[AMR][1000 genomes] |
| rs73822691 | 0.85[AMR][1000 genomes] |
| rs73822692 | 0.90[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73822695 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73823214 | 0.80[AMR][1000 genomes] |
| rs73823219 | 0.80[AMR][1000 genomes] |
| rs73825907 | 0.95[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73825910 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs73825911 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs73825913 | 0.90[AMR][1000 genomes] |
| rs73825914 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes] |
| rs73825923 | 0.95[AMR][1000 genomes] |
| rs73825925 | 0.95[AMR][1000 genomes] |
| rs73825926 | 0.95[AMR][1000 genomes] |
| rs7660587 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461377 | chr4:62368762-62883431 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv594328 | chr4:62368762-62883431 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004815 | chr4:62398737-62553769 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv537110 | chr4:62398737-62553769 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879077 | chr4:62419426-62545435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:62506000-62506800 | Enhancers | Brain Substantia Nigra | brain |
