Variant report

Variant	rs73825923
Chromosome Location	chr4:62555687-62555688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12108397	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60293956	0.84[AMR][1000 genomes]
rs61350038	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61483832	0.84[AMR][1000 genomes]
rs73822692	0.84[AMR][1000 genomes]
rs73822695	0.90[AMR][1000 genomes]
rs73823214	0.84[AMR][1000 genomes]
rs73823219	0.84[AMR][1000 genomes]
rs73825906	0.95[AMR][1000 genomes]
rs73825907	0.90[AMR][1000 genomes]
rs73825910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825911	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73825913	0.95[AMR][1000 genomes]
rs73825914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73825926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv968064	chr4:62554545-62557658	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62549200-62560400	Weak transcription	Fetal Stomach	stomach
2	chr4:62552600-62556600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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