Variant report

Variant	rs61483832
Chromosome Location	chr4:62598291-62598292
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12108397	0.84[AMR][1000 genomes]
rs55895677	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57328855	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59461758	1.00[EUR][1000 genomes]
rs60293956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60655392	0.83[AMR][1000 genomes]
rs61350038	0.84[AMR][1000 genomes]
rs73822690	0.83[AMR][1000 genomes]
rs73822691	0.83[AMR][1000 genomes]
rs73823214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823223	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73823225	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823230	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825906	0.80[AMR][1000 genomes]
rs73825907	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825910	0.84[AMR][1000 genomes]
rs73825911	0.80[AMR][1000 genomes]
rs73825913	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825914	0.84[AMR][1000 genomes]
rs73825923	0.84[AMR][1000 genomes]
rs73825925	0.84[AMR][1000 genomes]
rs73825926	0.84[AMR][1000 genomes]
rs7660587	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62578800-62602000	Weak transcription	Aorta	Aorta
2	chr4:62579400-62606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62587600-62598600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62589800-62599000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:62590000-62601000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:62590200-62599400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:62590200-62600400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:62590400-62600400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:62590800-62606400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:62593600-62606000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:62594600-62609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:62596400-62606400	Weak transcription	Fetal Kidney	kidney
13	chr4:62596800-62598800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:62597000-62598400	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:62597000-62598600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:62597000-62598600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:62597000-62606400	Weak transcription	Brain Substantia Nigra	brain
18	chr4:62597200-62599000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:62597200-62606000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:62597200-62606400	Weak transcription	Fetal Heart	heart
21	chr4:62597200-62609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:62597600-62600400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:62597600-62602800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr4:62597800-62600400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:62597800-62606200	Weak transcription	Brain Angular Gyrus	brain
26	chr4:62598200-62598600	Weak transcription	Fetal Lung	lung

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