Variant report

Variant	rs73823225
Chromosome Location	chr4:62607262-62607263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55895677	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57328855	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59461758	1.00[EUR][1000 genomes]
rs60293956	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61483832	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823214	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823219	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823223	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73823230	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825907	1.00[EUR][1000 genomes]
rs73825913	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62594600-62609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:62597200-62609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:62599800-62608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:62603800-62607800	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr4:62605000-62607400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:62606000-62607400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:62606000-62607800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:62606200-62607400	Enhancers	Brain Angular Gyrus	brain
9	chr4:62606200-62607600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:62606200-62607800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:62606200-62607800	Enhancers	Liver	Liver
12	chr4:62606200-62608000	Enhancers	Fetal Stomach	stomach
13	chr4:62606400-62607400	Enhancers	Brain Germinal Matrix	brain
14	chr4:62606400-62607400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr4:62606400-62607400	Enhancers	Fetal Heart	heart
16	chr4:62606400-62607400	Enhancers	Fetal Kidney	kidney
17	chr4:62606400-62607600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:62606600-62607800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:62606600-62607800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:62606600-62607800	Enhancers	Fetal Brain Female	brain
21	chr4:62606600-62607800	Enhancers	Fetal Muscle Leg	muscle
22	chr4:62606800-62607600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr4:62606800-62607600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:62606800-62608000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr4:62607000-62607400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:62607000-62607400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:62607000-62607400	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr4:62607000-62608200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr4:62607200-62607400	Enhancers	Fetal Lung	lung
30	chr4:62607200-62607600	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr4:62607200-62607800	Enhancers	Aorta	Aorta
32	chr4:62607200-62608000	Enhancers	Fetal Brain Male	brain
33	chr4:62607200-62608600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr4:62607200-62609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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