Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:62525228..62527571-chr4:62528820..62531208,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12108397	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55895677	1.00[EUR][1000 genomes]
rs57328855	1.00[EUR][1000 genomes]
rs59461758	1.00[EUR][1000 genomes]
rs60293956	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60655392	0.84[AMR][1000 genomes]
rs61350038	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61483832	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822690	0.84[AMR][1000 genomes]
rs73822691	0.84[AMR][1000 genomes]
rs73822692	0.89[AMR][1000 genomes]
rs73822695	0.84[AMR][1000 genomes]
rs73823214	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823219	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823223	1.00[EUR][1000 genomes]
rs73823225	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823230	1.00[EUR][1000 genomes]
rs73825906	0.90[AMR][1000 genomes]
rs73825907	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73825910	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73825911	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73825914	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73825923	0.95[AMR][1000 genomes]
rs73825925	0.95[AMR][1000 genomes]
rs73825926	0.95[AMR][1000 genomes]
rs7660587	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879077	chr4:62419426-62545435	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62527600-62529200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:62527600-62529400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62527600-62529400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:62527800-62529400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
5	chr4:62527800-62529800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62528000-62529400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:62528000-62529400	ZNF genes & repeats	Fetal Stomach	stomach
8	chr4:62528200-62529200	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr4:62528200-62529400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
10	chr4:62528400-62529400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:62528600-62529000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:62528600-62529000	ZNF genes & repeats	Fetal Lung	lung
13	chr4:62528600-62529200	ZNF genes & repeats	Brain Angular Gyrus	brain
14	chr4:62528600-62550200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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