Variant report

Variant	rs73825914
Chromosome Location	chr4:62529179-62529180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12108397	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60293956	0.84[AMR][1000 genomes]
rs61350038	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61483832	0.84[AMR][1000 genomes]
rs73822692	0.84[AMR][1000 genomes]
rs73822695	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73823214	0.84[AMR][1000 genomes]
rs73823219	0.84[AMR][1000 genomes]
rs73825906	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs73825907	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73825910	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825911	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825913	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73825923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879077	chr4:62419426-62545435	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62527600-62529200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:62527600-62529400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62527600-62529400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:62527800-62529400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
5	chr4:62527800-62529800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62528000-62529400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:62528000-62529400	ZNF genes & repeats	Fetal Stomach	stomach
8	chr4:62528200-62529200	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr4:62528200-62529400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
10	chr4:62528400-62529400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:62528600-62529200	ZNF genes & repeats	Brain Angular Gyrus	brain
12	chr4:62528600-62550200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:62529000-62529400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:62529000-62529400	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr4:62529000-62529600	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links