Variant report

Variant	rs55895677
Chromosome Location	chr4:62629771-62629772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57328855	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59461758	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60293956	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61483832	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823214	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823219	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823223	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73823225	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73823230	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823232	0.84[AMR][1000 genomes]
rs73823233	0.84[AMR][1000 genomes]
rs73825907	1.00[EUR][1000 genomes]
rs73825913	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62623600-62631600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr4:62623800-62632200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr4:62624000-62633000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr4:62624800-62632400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr4:62624800-62633400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr4:62625200-62632600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr4:62625200-62633000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr4:62625400-62630600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:62625400-62631000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
10	chr4:62625400-62632600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
11	chr4:62627600-62631400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:62627800-62631400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:62627800-62635800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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