Variant report

Variant	rs73823230
Chromosome Location	chr4:62638509-62638510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55895677	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57328855	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59461758	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60293956	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61483832	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823214	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823219	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823223	1.00[EUR][1000 genomes]
rs73823225	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823232	0.89[AMR][1000 genomes]
rs73823233	0.89[AMR][1000 genomes]
rs73823237	0.84[AMR][1000 genomes]
rs73823238	0.84[AMR][1000 genomes]
rs73825907	1.00[EUR][1000 genomes]
rs73825913	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62635800-62638800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:62635800-62639600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:62636400-62639800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:62636600-62638600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:62636800-62639000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr4:62636800-62639600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:62636800-62639600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:62636800-62640800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:62637000-62639800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:62637000-62640000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:62637000-62641000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:62637600-62641200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:62637600-62656000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:62637800-62639400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:62638000-62640600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:62638200-62639000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links