Variant report

Variant	rs17091657
Chromosome Location	chr3:195809374-195809375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr3:195807823-195809960	IMR90	lung:	n/a	chr3:195808419-195808428 chr3:195808418-195808429 chr3:195808417-195808430 chr3:195808418-195808429 chr3:195808420-195808429 chr3:195808417-195808430 chr3:195808421-195808428 chr3:195808419-195808429
2	BCLAF1	chr3:195808620-195809623	GM12878	blood:	n/a	chr3:195809098-195809111 chr3:195808762-195808775 chr3:195809001-195809014
3	IRF1	chr3:195807406-195809731	K562	blood:	n/a	chr3:195809586-195809600 chr3:195807710-195807724 chr3:195809425-195809445 chr3:195808997-195809011 chr3:195809588-195809602 chr3:195809583-195809600 chr3:195809587-195809607 chr3:195809588-195809599 chr3:195807800-195807817 chr3:195809588-195809601 chr3:195809588-195809601 chr3:195807600-195807617 chr3:195809080-195809094 chr3:195809589-195809603 chr3:195809585-195809599 chr3:195809588-195809601 chr3:195809536-195809550
4	CREB1	chr3:195808407-195809421	K562	blood:	n/a	n/a
5	ARID3A	chr3:195808564-195809464	K562	blood:	n/a	n/a
6	E2F1	chr3:195808004-195809453	Hela-S3	cervix:	n/a	chr3:195808431-195808441 chr3:195808996-195809006 chr3:195808792-195808799 chr3:195808792-195808799 chr3:195809154-195809165 chr3:195809081-195809090 chr3:195809154-195809161 chr3:195809001-195809010 chr3:195809154-195809165 chr3:195808792-195808799 chr3:195809102-195809111 chr3:195808791-195808803 chr3:195808005-195808020 chr3:195809154-195809165
7	PML	chr3:195808523-195809413	MCF-7	breast:	n/a	n/a
8	CBX3	chr3:195808367-195809805	K562	blood:	n/a	n/a
9	POLR2A	chr3:195807342-195809437	Hela-S3	cervix:	n/a	n/a
10	EP300	chr3:195808755-195809437	GM12878	blood:	n/a	n/a
11	MAX	chr3:195807825-195809782	Hela-S3	cervix:	n/a	chr3:195808419-195808428 chr3:195808418-195808429 chr3:195808417-195808430 chr3:195808418-195808429 chr3:195808420-195808429 chr3:195808417-195808430 chr3:195808421-195808428 chr3:195808419-195808429 chr3:195808419-195808429
12	IRF1	chr3:195807481-195809670	K562	blood:	n/a	chr3:195809586-195809600 chr3:195807710-195807724 chr3:195809425-195809445 chr3:195808997-195809011 chr3:195809588-195809602 chr3:195809583-195809600 chr3:195809587-195809607 chr3:195809588-195809599 chr3:195807800-195807817 chr3:195809588-195809601 chr3:195809588-195809601 chr3:195807600-195807617 chr3:195809080-195809094 chr3:195809589-195809603 chr3:195809585-195809599 chr3:195809588-195809601 chr3:195809536-195809550
13	POLR2A	chr3:195808020-195809460	HepG2	liver:	n/a	n/a
14	POLR2A	chr3:195807009-195809500	HepG2	liver:	n/a	n/a
15	FOXM1	chr3:195808721-195809483	GM12878	blood:	n/a	n/a
16	MAX	chr3:195808189-195809406	H1-hESC	embryonic stem cell:	n/a	chr3:195808419-195808428 chr3:195808418-195808429 chr3:195808417-195808430 chr3:195808418-195808429 chr3:195808420-195808429 chr3:195808417-195808430 chr3:195808421-195808428 chr3:195808419-195808429 chr3:195808419-195808429
17	POU2F2	chr3:195807913-195809403	GM12878	blood:	n/a	chr3:195809099-195809111 chr3:195808257-195808272
18	POLR2A	chr3:195807744-195809389	GM12892	blood:	n/a	n/a
19	EBF1	chr3:195808100-195809450	GM12878	blood:	n/a	chr3:195809011-195809022
20	MYBL2	chr3:195808428-195809518	HepG2	liver:	n/a	n/a
21	CTCF	chr3:195809260-195809410	HA-sp	spinal cord:	n/a	n/a
22	ZBTB33	chr3:195808613-195809415	SK-N-SH	brain:	n/a	chr3:195809047-195809062 chr3:195809103-195809113
23	POLR2A	chr3:195808250-195809410	MCF-7	breast:	n/a	n/a
24	MAX	chr3:195808694-195809418	SK-N-SH	brain:	n/a	n/a
25	POLR2A	chr3:195807855-195809393	GM12892	blood:	n/a	n/a
26	TEAD4	chr3:195807250-195809647	K562	blood:	n/a	chr3:195809363-195809372
27	MAX	chr3:195808037-195809619	HCT-116	colon:	n/a	chr3:195808419-195808428 chr3:195808418-195808429 chr3:195808417-195808430 chr3:195808418-195808429 chr3:195808420-195808429 chr3:195808417-195808430 chr3:195808421-195808428 chr3:195808419-195808429 chr3:195808419-195808429
28	POLR2A	chr3:195807177-195809545	SK-N-MC	brain:	n/a	n/a
29	SP1	chr3:195808606-195809386	A549	lung:	n/a	chr3:195809080-195809092 chr3:195808999-195809011 chr3:195809081-195809090 chr3:195809101-195809113 chr3:195808999-195809010 chr3:195809077-195809091 chr3:195809000-195809009 chr3:195809000-195809009 chr3:195809000-195809010 chr3:195809082-195809091 chr3:195809080-195809092 chr3:195808999-195809011 chr3:195809001-195809010 chr3:195809000-195809010 chr3:195809082-195809091 chr3:195809103-195809112 chr3:195809101-195809113
30	POLR2A	chr3:195807839-195809380	GM12878	blood:	n/a	n/a
31	MXI1	chr3:195807868-195809784	HepG2	liver:	n/a	chr3:195808418-195808427
32	FOXP2	chr3:195808750-195809375	SK-N-MC	brain:	n/a	n/a
33	RELA	chr3:195808753-195809675	GM12892	blood:	n/a	n/a
34	GABPA	chr3:195808151-195809446	MCF-7	breast:	n/a	chr3:195809102-195809111 chr3:195809081-195809090 chr3:195808493-195808507 chr3:195808462-195808476 chr3:195809001-195809010
35	MAX	chr3:195808035-195809600	A549	lung:	n/a	chr3:195808419-195808428 chr3:195808418-195808429 chr3:195808417-195808430 chr3:195808418-195808429 chr3:195808420-195808429 chr3:195808417-195808430 chr3:195808421-195808428 chr3:195808419-195808429 chr3:195808419-195808429
36	POLR2A	chr3:195808313-195809400	GM10847	blood:	n/a	n/a
37	TBP	chr3:195808750-195809759	Hela-S3	cervix:	n/a	n/a
38	FOXA1	chr3:195808807-195809449	T-47D	breast:	n/a	n/a
39	POLR2A	chr3:195807387-195809407	HepG2	liver:	n/a	n/a
40	MXI1	chr3:195807815-195809414	GM12878	blood:	n/a	chr3:195808418-195808427
41	POLR2A	chr3:195807352-195809375	Hela-S3	cervix:	n/a	n/a
42	SIN3AK20	chr3:195807293-195809619	MCF-7	breast:	n/a	n/a
43	GABPA	chr3:195808512-195809430	MCF-7	breast:	n/a	chr3:195809102-195809111 chr3:195809081-195809090 chr3:195809001-195809010
44	E2F6	chr3:195808241-195809390	H1-hESC	embryonic stem cell:	n/a	chr3:195808431-195808441 chr3:195808996-195809006 chr3:195808792-195808799 chr3:195808792-195808799 chr3:195809154-195809165 chr3:195809081-195809090 chr3:195809154-195809161 chr3:195809001-195809010 chr3:195808792-195808799 chr3:195809102-195809111 chr3:195808791-195808803 chr3:195809154-195809165
45	POLR2A	chr3:195808587-195809380	HUVEC	blood vessel:	n/a	n/a
46	SIN3A	chr3:195807743-195809521	H1-hESC	embryonic stem cell:	n/a	chr3:195808445-195808456 chr3:195808677-195808688
47	NRF1	chr3:195808112-195809651	SK-N-SH	brain:	n/a	chr3:195809102-195809111 chr3:195809081-195809090 chr3:195808493-195808507 chr3:195808462-195808476 chr3:195809001-195809010
48	NFIC	chr3:195808628-195809520	ECC-1	luminal epithelium:	n/a	n/a
49	POLR2A	chr3:195807390-195809508	GM12878	blood:	n/a	n/a
50	EP300	chr3:195807779-195809462	ECC-1	luminal epithelium:	n/a	chr3:195808483-195808499 chr3:195808327-195808336 chr3:195808484-195808500 chr3:195809427-195809441

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:195809355-195809405	NT2-D1	testis:	n/a
2	chr3:195809355-195809405	AG04450	lung:	fetal
3	chr3:195809355-195809405	NH-A	brain:	n/a
4	chr3:195809355-195809405	Caco-2	colon:	n/a
5	chr3:195809355-195809405	HCF	heart:	n/a
6	chr3:195809355-195809405	HRCEpiC	kidney:	n/a
7	chr3:195809355-195809405	PANC-1	pancreas:	n/a
8	chr3:195809355-195809405	ovcar-3	ovarian:	n/a
9	chr3:195809355-195809405	HPAEpiC	pulmonary alveolar:	n/a
10	chr3:195809355-195809405	HRE	kidney:	n/a
11	chr3:195809355-195809405	PrEC	prostate:	n/a
12	chr3:195809355-195809405	ProgFib	skin:	n/a
13	chr3:195809355-195809405	U87	brain:	n/a
14	chr3:195809355-195809405	GM12892	blood:	n/a
15	chr3:195809355-195809405	GM12891	blood:	n/a
16	chr3:195809355-195809405	HEEpiC	esophagus:	n/a
17	chr3:195809355-195809405	AoSMC	blood vessel:	n/a
18	chr3:195809355-195809405	HepG2	liver:	n/a
19	chr3:195809355-195809405	HCPEpiC	choroid plexus:	n/a
20	chr3:195809355-195809405	BJ	skin:	n/a
21	chr3:195809355-195809405	IMR90	lung:	fetal
22	chr3:195809355-195809405	HNPCEpiC	eye:	n/a
23	chr3:195809355-195809405	T-47D	breast:	n/a
24	chr3:195809355-195809405	HCM	heart:	n/a
25	chr3:195809355-195809405	HRPEpiC	eye:	n/a
26	chr3:195809355-195809405	LNCaP	prostate:	n/a
27	chr3:195809355-195809405	GM12878	blood:	n/a
28	chr3:195809355-195809405	AG04449	skin:	fetal
29	chr3:195809355-195809405	ECC-1	luminal epithelium:	n/a
30	chr3:195809355-195809405	RPTEC	kidney:	n/a
31	chr3:195809355-195809405	HUVEC	blood vessel:	n/a
32	chr3:195809355-195809405	SAEC	small airway:	n/a
33	chr3:195809355-195809405	SK-N-SH_RA	brain:	n/a
34	chr3:195809355-195809405	MCF10A-Er-Src	breast:	n/a
35	chr3:195809355-195809405	BE2_C	brain:	n/a
36	chr3:195809355-195809405	HEK293	kidney:	embryo
37	chr3:195809355-195809405	SK-N-MC	brain:	n/a
38	chr3:195809355-195809405	Hepatocyte	liver:	n/a
39	chr3:195809355-195809405	AG09309	skin:	n/a
40	chr3:195809355-195809405	Jurkat	blood:	n/a
41	chr3:195809355-195809405	HIPEpiC	eye:	n/a
42	chr3:195809355-195809405	AG10803	skin:	n/a
43	chr3:195809355-195809405	Hela-S3	cervix:	n/a
44	chr3:195809355-195809405	HL-60	blood:	n/a
45	chr3:195809355-195809405	HAEpiC	amniotic membrane:	n/a
46	chr3:195809355-195809405	PFSK-1	brain:	n/a
47	chr3:195809355-195809405	SK-N-SH	brain:	n/a
48	chr3:195809355-195809405	NHDF-neo	bronchial:	n/a
49	chr3:195809355-195809405	NB4	blood:	n/a
50	chr3:195809355-195809405	SKMC	muscle:	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:7254466..7255518-chr3:195808392..195809393,4	Hela-S3	cervix:
2	chr19:55895702..55896469-chr3:195808853..195809374,2	HCT-116	colon:
3	chr3:195796379..195810322-chr3:195910077..195926320,43	MCF-7	breast:
4	chr3:195806834..195810300-chr3:195921968..195927592,7	MCF-7	breast:
5	chr3:195807059..195809798-chr3:196063350..196066594,3	K562	blood:
6	chr3:195808775..195809379-chr8:17104143..17104871,2	HCT-116	colon:
7	chr3:195807808..195810201-chr5:170814648..170817233,2	MCF-7	breast:
8	chr3:195791142..195792773-chr3:195808257..195810769,2	MCF-7	breast:
9	chr3:195793504..195812987-chr3:195901613..195938073,113	K562	blood:
10	chr3:195808872..195809382-chr6:5260583..5261415,2	Hela-S3	cervix:
11	chr15:67834545..67835150-chr3:195808441..195809425,2	Hela-S3	cervix:
12	chr13:25086337..25087069-chr3:195808572..195809411,2	NB4	blood:
13	chr3:195809070..195810748-chr3:195828208..195830757,2	MCF-7	breast:
14	chr3:195808373..195809995-chr3:196228997..196231632,2	K562	blood:
15	chr3:195807469..195810377-chr3:195942089..195944693,4	MCF-7	breast:
16	chr3:195781940..195789641-chr3:195805045..195810311,11	K562	blood:
17	chr3:195807091..195810537-chr3:195867675..195869638,3	MCF-7	breast:
18	chr3:195785083..195788008-chr3:195807392..195810078,3	MCF-7	breast:
19	chr3:195806658..195811369-chr3:195865432..195872361,14	MCF-7	breast:
20	chr11:73087137..73087958-chr3:195809064..195809637,2	HCT-116	colon:
21	chr3:195808495..195810108-chr3:196228997..196231874,2	K562	blood:
22	chr3:195808781..195809452-chr6:33239324..33239934,2	HCT-116	colon:
23	chr19:49989753..49992423-chr3:195807241..195809770,2	MCF-7	breast:
24	chr3:195635569..195638518-chr3:195807424..195810696,3	MCF-7	breast:
25	chr3:195794950..195798022-chr3:195807553..195809899,4	MCF-7	breast:
26	chr3:195804323..195810515-chr3:195865435..195874009,30	K562	blood:
27	chr3:195790520..195792759-chr3:195806929..195809899,2	MCF-7	breast:
28	chr3:195806535..195810385-chr3:195863612..195875110,36	K562	blood:
29	chr3:195793504..195812415-chr3:195915832..195927942,46	K562	blood:

Variant related genes	Relation type
TFRC	TF binding region
TFRC	CpG island
ENSG00000145107	Chromatin interaction
ENSG00000273331	Chromatin interaction
ENSG00000137764	Chromatin interaction
ENSG00000214113	Chromatin interaction
ENSG00000224652	Chromatin interaction
ENSG00000142541	Chromatin interaction
ENSG00000198791	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000163959	Chromatin interaction
ENSG00000102699	Chromatin interaction
ENSG00000222335	Chromatin interaction
ENSG00000181163	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000213859	Chromatin interaction
ENSG00000072274	Chromatin interaction
ENSG00000054967	Chromatin interaction
ENSG00000155975	Chromatin interaction
ENSG00000163958	Chromatin interaction
ENSG00000163961	Chromatin interaction
ENSG00000061938	Chromatin interaction
ENSG00000270964	Chromatin interaction
ENSG00000233493	Chromatin interaction
ENSG00000145982	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17091582	0.87[ASN][1000 genomes]
rs17091585	0.87[ASN][1000 genomes]
rs2300776	0.82[ASN][1000 genomes]
rs3804142	0.82[ASN][1000 genomes]
rs41297473	0.82[ASN][1000 genomes]
rs41301369	0.82[ASN][1000 genomes]
rs41303521	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv428102	chr3:195201080-195829426	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv428430	chr3:195201080-195829426	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
5	nsv1010395	chr3:195641908-195848264	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv532213	chr3:195643944-196063636	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
7	esv1820982	chr3:195651349-195835519	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv997797	chr3:195658360-196212958	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
9	nsv878170	chr3:195677895-195871388	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv878171	chr3:195677895-195959924	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
11	nsv1008512	chr3:195709662-195974936	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
12	nsv1002584	chr3:195734933-195910772	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
13	nsv432543	chr3:195746690-196015690	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
14	nsv878172	chr3:195751853-195831098	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
15	nsv532214	chr3:195762648-195916068	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
16	nsv1002065	chr3:195769609-195877692	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
17	nsv1009105	chr3:195769609-195984388	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
18	nsv524410	chr3:195776240-195816195	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
19	nsv461130	chr3:195776240-195907653	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
20	nsv593069	chr3:195776240-195907653	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
21	nsv1005558	chr3:195789462-195919077	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
22	nsv536890	chr3:195789462-195919077	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195806000-195809400	Active TSS	Brain Anterior Caudate	brain
2	chr3:195806200-195809800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:195806600-195809400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:195806600-195809600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:195806800-195809400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr3:195806800-195809400	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr3:195807000-195809400	Active TSS	A549	lung
8	chr3:195807000-195809400	Active TSS	K562	blood
9	chr3:195807000-195809600	Active TSS	Colonic Mucosa	Colon
10	chr3:195807200-195809400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:195807200-195809400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr3:195807200-195809400	Active TSS	Psoas Muscle	Psoas
13	chr3:195807400-195809400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr3:195807400-195809400	Active TSS	Ovary	ovary
15	chr3:195807400-195809400	Active TSS	Sigmoid Colon	Sigmoid Colon
16	chr3:195807400-195809800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:195807400-195809800	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr3:195807600-195809400	Active TSS	Fetal Kidney	kidney
19	chr3:195807600-195809400	Active TSS	Lung	lung
20	chr3:195807600-195809600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:195807800-195809400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:195807800-195809400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:195807800-195809400	Active TSS	Brain Substantia Nigra	brain
24	chr3:195807800-195809400	Active TSS	Left Ventricle	heart
25	chr3:195807800-195809600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:195807800-195809600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:195807800-195809600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:195807800-195809600	Active TSS	Brain Angular Gyrus	brain
29	chr3:195807800-195809600	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr3:195807800-195809600	Active TSS	Thymus	Thymus
31	chr3:195808000-195809400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:195808000-195809400	Active TSS	Brain Germinal Matrix	brain
33	chr3:195808000-195809400	Active TSS	Brain Hippocampus Middle	brain
34	chr3:195808000-195809400	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr3:195808000-195809400	Active TSS	Fetal Brain Female	brain
36	chr3:195808000-195809400	Active TSS	Gastric	stomach
37	chr3:195808000-195809400	Active TSS	Placenta Amnion	Placenta Amnion
38	chr3:195808000-195809400	Active TSS	Spleen	Spleen
39	chr3:195808000-195809600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr3:195808000-195809600	Active TSS	Fetal Brain Male	brain
41	chr3:195808000-195809600	Active TSS	Pancreas	Pancrea
42	chr3:195808000-195809600	Active TSS	Stomach Mucosa	stomach
43	chr3:195808000-195809800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:195808000-195809800	Active TSS	Brain Cingulate Gyrus	brain
45	chr3:195808200-195809400	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr3:195808200-195809400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr3:195808200-195809400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr3:195808200-195809400	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr3:195808200-195809400	Active TSS	Fetal Stomach	stomach
50	chr3:195808200-195809600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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