Variant report

Variant	rs17091687
Chromosome Location	chr1:72193593-72193594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:72166413..72168725-chr1:72192259..72193957,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10158969	1.00[AMR][1000 genomes]
rs10159137	1.00[AMR][1000 genomes]
rs11805445	1.00[AMR][1000 genomes]
rs11812000	1.00[AMR][1000 genomes]
rs13313022	1.00[AMR][1000 genomes]
rs1574837	1.00[AMR][1000 genomes]
rs17091782	1.00[AMR][1000 genomes]
rs2554405	1.00[AMR][1000 genomes]
rs2554406	1.00[AMR][1000 genomes]
rs2554407	1.00[AMR][1000 genomes]
rs2554408	1.00[AMR][1000 genomes]
rs2554409	1.00[AMR][1000 genomes]
rs2554410	1.00[AMR][1000 genomes]
rs2554418	1.00[AMR][1000 genomes]
rs2768382	1.00[AMR][1000 genomes]
rs2768383	1.00[AMR][1000 genomes]
rs2768384	1.00[AMR][1000 genomes]
rs2768385	1.00[AMR][1000 genomes]
rs2768387	1.00[AMR][1000 genomes]
rs2768389	1.00[AMR][1000 genomes]
rs2768391	1.00[AMR][1000 genomes]
rs2768396	1.00[AMR][1000 genomes]
rs2801329	1.00[AMR][1000 genomes]
rs2801330	1.00[AMR][1000 genomes]
rs2801332	1.00[AMR][1000 genomes]
rs2801335	1.00[AMR][1000 genomes]
rs28615945	1.00[AMR][1000 genomes]
rs3078155	1.00[AMR][1000 genomes]
rs58290687	1.00[AMR][1000 genomes]
rs72935829	1.00[AMR][1000 genomes]
rs72935832	1.00[AMR][1000 genomes]
rs72935834	1.00[AMR][1000 genomes]
rs967817	1.00[AMR][1000 genomes]
rs967818	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1003446	chr1:72060680-72419918	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv461884	chr1:72077549-72238691	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv546476	chr1:72077549-72238691	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv461895	chr1:72079898-72206799	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv546477	chr1:72079898-72206799	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1006188	chr1:72081620-72215373	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv534993	chr1:72081620-72215373	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv817447	chr1:72098815-72558020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1008210	chr1:72099161-72374197	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv533779	chr1:72124095-72241965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv830181	chr1:72155983-72296578	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72189400-72197000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:72189600-72197600	Weak transcription	Thymus	Thymus
3	chr1:72191400-72198800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:72193400-72193800	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr1:72193400-72194200	Enhancers	Dnd41	blood

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