Variant report

Variant	rs2554405
Chromosome Location	chr1:72415998-72415999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10157310	1.00[AFR][1000 genomes]
rs10158969	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11808697	1.00[YRI][hapmap]
rs11812000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13313022	1.00[AMR][1000 genomes]
rs1574837	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17091687	1.00[AMR][1000 genomes]
rs17091782	1.00[AMR][1000 genomes]
rs2554406	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554409	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2554418	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2630403	1.00[AMR][1000 genomes]
rs2768382	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2768383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2768384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2768385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2768386	1.00[AFR][1000 genomes]
rs2768387	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2768389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2768391	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2768396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801329	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2821240	1.00[AMR][1000 genomes]
rs2821242	1.00[AMR][1000 genomes]
rs28615945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3078155	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681319	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72935834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7543109	1.00[YRI][hapmap]
rs967817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs967818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003446	chr1:72060680-72419918	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817447	chr1:72098815-72558020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916783	chr1:72196061-72707953	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1007910	chr1:72247302-72543998	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv999162	chr1:72319163-72477496	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv534995	chr1:72319163-72477496	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv428763	chr1:72353556-72499701	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72415000-72416600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:72415800-72416200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:72415800-72416400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr1:72415800-72416600	Enhancers	Brain Anterior Caudate	brain

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