Variant report

Variant	rs17091832
Chromosome Location	chr14:35844945-35844946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35833202..35845291-chr14:35869974..35876968,23	K562	blood:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17091833	1.00[EUR][1000 genomes]
rs17103117	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17103169	1.00[AMR][1000 genomes]
rs17103180	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs17103259	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4981275	1.00[AMR][1000 genomes]
rs4981282	1.00[AMR][1000 genomes]
rs56694711	1.00[AMR][1000 genomes]
rs57675424	1.00[AMR][1000 genomes]
rs59193012	1.00[AMR][1000 genomes]
rs7146853	1.00[AMR][1000 genomes]
rs8004894	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
4	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35837400-35852400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:35838800-35847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:35839600-35845000	Weak transcription	Spleen	Spleen
4	chr14:35839600-35852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:35840200-35845000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:35841600-35853000	Weak transcription	Right Atrium	heart
7	chr14:35841800-35845000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:35842000-35846000	Enhancers	Placenta	Placenta
9	chr14:35842400-35845000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:35842400-35845000	Weak transcription	Lung	lung
11	chr14:35843000-35846000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr14:35843200-35850000	Enhancers	Hela-S3	cervix
13	chr14:35843400-35845000	Enhancers	HepG2	liver
14	chr14:35843400-35845200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:35843400-35845200	Weak transcription	Fetal Thymus	thymus
16	chr14:35843600-35852400	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:35844000-35845000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:35844000-35845000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:35844000-35845000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:35844000-35845000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:35844000-35845200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:35844000-35845600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:35844000-35845800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:35844000-35846000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr14:35844000-35846000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:35844000-35846400	Enhancers	A549	lung
27	chr14:35844000-35847600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:35844000-35847600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:35844000-35848800	Weak transcription	Fetal Intestine Large	intestine
30	chr14:35844000-35849400	Weak transcription	Fetal Intestine Small	intestine
31	chr14:35844000-35850200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:35844000-35852800	Weak transcription	HUVEC	blood vessel
33	chr14:35844200-35845000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:35844200-35845000	Weak transcription	HMEC	breast
35	chr14:35844200-35845000	Weak transcription	NHEK	skin
36	chr14:35844200-35845400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:35844200-35846000	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr14:35844200-35847400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:35844200-35847800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:35844200-35847800	Weak transcription	Osteobl	bone
41	chr14:35844200-35849800	Weak transcription	Adipose Nuclei	Adipose
42	chr14:35844600-35846200	Enhancers	K562	blood
43	chr14:35844800-35845400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links