Variant report

Variant	rs17091833
Chromosome Location	chr14:35845363-35845364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11845412	0.97[AFR][1000 genomes]
rs17091832	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17103259	1.00[EUR][1000 genomes]
rs8004894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
4	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35837400-35852400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:35838800-35847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:35839600-35852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:35841600-35853000	Weak transcription	Right Atrium	heart
5	chr14:35842000-35846000	Enhancers	Placenta	Placenta
6	chr14:35843000-35846000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:35843200-35850000	Enhancers	Hela-S3	cervix
8	chr14:35843600-35852400	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:35844000-35845600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:35844000-35845800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:35844000-35846000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr14:35844000-35846000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:35844000-35846400	Enhancers	A549	lung
14	chr14:35844000-35847600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:35844000-35847600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:35844000-35848800	Weak transcription	Fetal Intestine Large	intestine
17	chr14:35844000-35849400	Weak transcription	Fetal Intestine Small	intestine
18	chr14:35844000-35850200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:35844000-35852800	Weak transcription	HUVEC	blood vessel
20	chr14:35844200-35845400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:35844200-35846000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr14:35844200-35847400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:35844200-35847800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:35844200-35847800	Weak transcription	Osteobl	bone
25	chr14:35844200-35849800	Weak transcription	Adipose Nuclei	Adipose
26	chr14:35844600-35846200	Enhancers	K562	blood
27	chr14:35844800-35845400	Enhancers	NHDF-Ad	bronchial
28	chr14:35845000-35845400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:35845000-35845400	Enhancers	Fetal Muscle Leg	muscle
30	chr14:35845000-35845400	Enhancers	GM12878-XiMat	blood
31	chr14:35845000-35845600	Enhancers	Spleen	Spleen
32	chr14:35845000-35845800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr14:35845000-35845800	Enhancers	Primary hematopoietic stem cells	blood
34	chr14:35845000-35846000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:35845000-35846000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr14:35845000-35846000	Enhancers	Fetal Muscle Trunk	muscle
37	chr14:35845000-35846000	Enhancers	Lung	lung
38	chr14:35845200-35845600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:35845200-35845600	Bivalent Enhancer	HepG2	liver
40	chr14:35845200-35846000	Enhancers	Fetal Thymus	thymus
41	chr14:35845200-35846200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:35845200-35847200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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