Variant report

Variant	rs17093293
Chromosome Location	chr8:20739362-20739363
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10503696	0.89[ASN][1000 genomes]
rs13264100	0.98[ASN][1000 genomes]
rs17093302	0.91[ASN][1000 genomes]
rs1866959	1.00[ASN][1000 genomes]
rs6984780	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs721208	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73668267	0.91[ASN][1000 genomes]
rs767529	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv831257	chr8:20610436-20767433	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1020160	chr8:20652610-20825810	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv539526	chr8:20652610-20825810	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1024612	chr8:20665835-20837761	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv539527	chr8:20665835-20837761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv890645	chr8:20708335-20762512	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv890646	chr8:20714686-20843176	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20738400-20739400	Enhancers	Brain Germinal Matrix	brain
2	chr8:20738600-20739800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:20738600-20740000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:20738600-20740000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr8:20738600-20740000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr8:20738800-20739600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:20738800-20739600	Enhancers	Fetal Intestine Large	intestine
8	chr8:20738800-20739800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:20738800-20739800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:20739000-20739600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:20739000-20739800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:20739200-20739400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr8:20739200-20739600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:20739200-20739800	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
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