Variant report

Variant	rs17094039
Chromosome Location	chr10:117829192-117829193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:117826201..117829755-chr10:117829829..117832935,3	MCF-7	breast:
2	chr10:117828085..117832660-chr10:118029697..118032673,4	MCF-7	breast:
3	chr10:117828235..117829793-chr10:117830273..117833028,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17094049	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117815800-117840400	Weak transcription	HSMM	muscle
2	chr10:117821800-117830600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:117822800-117829200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:117823000-117835800	Weak transcription	HSMMtube	muscle
5	chr10:117825000-117830400	Weak transcription	Liver	Liver
6	chr10:117826800-117831000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:117827200-117829600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:117827200-117831200	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:117827600-117833600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:117827800-117832400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:117828200-117833800	Weak transcription	Fetal Thymus	thymus
12	chr10:117828600-117829400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:117828800-117829400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:117828800-117829600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:117828800-117829800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:117828800-117833000	Enhancers	Fetal Muscle Leg	muscle
17	chr10:117829000-117829400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:117829000-117829400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:117829000-117829400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:117829000-117829400	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr10:117829000-117829600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:117829000-117829600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:117829000-117829800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:117829000-117830000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr10:117829000-117830000	Enhancers	Fetal Lung	lung
26	chr10:117829000-117830800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr10:117829000-117831200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:117829000-117831200	Genic enhancers	Fetal Stomach	stomach
29	chr10:117829000-117833200	Enhancers	Colon Smooth Muscle	Colon

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