Variant report

Variant	rs17094049
Chromosome Location	chr10:117832828-117832829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:117826201..117829755-chr10:117829829..117832935,3	MCF-7	breast:
2	chr10:117828235..117829793-chr10:117830273..117833028,2	MCF-7	breast:
3	chr10:117831944..117834088-chr10:117853334..117856361,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17094039	1.00[MEX][hapmap]
rs3781510	1.00[TSI][hapmap]
rs7070834	0.85[YRI][hapmap]
rs7086529	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117815800-117840400	Weak transcription	HSMM	muscle
2	chr10:117823000-117835800	Weak transcription	HSMMtube	muscle
3	chr10:117827600-117833600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:117828200-117833800	Weak transcription	Fetal Thymus	thymus
5	chr10:117828800-117833000	Enhancers	Fetal Muscle Leg	muscle
6	chr10:117829000-117833200	Enhancers	Colon Smooth Muscle	Colon
7	chr10:117830800-117833800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:117831200-117836200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:117831200-117840200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:117832000-117833400	Enhancers	Fetal Stomach	stomach
11	chr10:117832000-117842400	Weak transcription	Liver	Liver
12	chr10:117832200-117837200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:117832400-117833000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:117832400-117833000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:117832400-117833200	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:117832400-117833400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:117832400-117833400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:117832400-117833600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:117832400-117834000	Enhancers	Brain Germinal Matrix	brain
20	chr10:117832600-117833000	Enhancers	Brain Substantia Nigra	brain
21	chr10:117832600-117833000	Enhancers	Stomach Smooth Muscle	stomach
22	chr10:117832600-117833200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:117832600-117833200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:117832600-117833200	Enhancers	Brain Angular Gyrus	brain
25	chr10:117832600-117833800	Enhancers	Brain Hippocampus Middle	brain
26	chr10:117832600-117833800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:117832800-117833000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:117832800-117833400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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