Variant report

Variant	rs7070834
Chromosome Location	chr10:117830056-117830057
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:117825734..117827871-chr10:117829516..117832007,2	K562	blood:
2	chr10:117826201..117829755-chr10:117829829..117832935,3	MCF-7	breast:
3	chr10:117828085..117832660-chr10:118029697..118032673,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17094049	0.85[YRI][hapmap]
rs56175262	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117815800-117840400	Weak transcription	HSMM	muscle
2	chr10:117821800-117830600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:117823000-117835800	Weak transcription	HSMMtube	muscle
4	chr10:117825000-117830400	Weak transcription	Liver	Liver
5	chr10:117826800-117831000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:117827200-117831200	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:117827600-117833600	Weak transcription	Brain Anterior Caudate	brain
8	chr10:117827800-117832400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:117828200-117833800	Weak transcription	Fetal Thymus	thymus
10	chr10:117828800-117833000	Enhancers	Fetal Muscle Leg	muscle
11	chr10:117829000-117830800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:117829000-117831200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:117829000-117831200	Genic enhancers	Fetal Stomach	stomach
14	chr10:117829000-117833200	Enhancers	Colon Smooth Muscle	Colon
15	chr10:117829400-117830600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:117829400-117830800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:117829400-117832400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:117829600-117830600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:117829600-117832400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:117829800-117830200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:117829800-117830200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:117830000-117831200	Enhancers	Stomach Smooth Muscle	stomach

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