Variant report

Variant	rs3781510
Chromosome Location	chr10:117857916-117857917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11197527	0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs11197528	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.99[ASN][1000 genomes]
rs11197532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17094049	1.00[TSI][hapmap]
rs3781509	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs3781511	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3824836	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3824837	0.99[ASN][1000 genomes]
rs3893581	0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv34187	chr10:117857916-117894117	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117849200-117858400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:117854600-117858000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:117855200-117859200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:117855400-117859000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:117855600-117859200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:117856000-117859400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:117856400-117858200	Enhancers	Brain Substantia Nigra	brain
8	chr10:117856400-117859200	Enhancers	HSMMtube	muscle
9	chr10:117856600-117858400	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:117856800-117858000	Enhancers	Brain Hippocampus Middle	brain
11	chr10:117856800-117858200	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:117856800-117858400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr10:117856800-117858600	Enhancers	Brain Anterior Caudate	brain
14	chr10:117856800-117859200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr10:117857000-117867600	Weak transcription	Liver	Liver
16	chr10:117857000-117872800	Weak transcription	HSMM	muscle
17	chr10:117857200-117858400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:117857200-117858400	Enhancers	Fetal Stomach	stomach
19	chr10:117857200-117859200	Enhancers	Fetal Kidney	kidney
20	chr10:117857200-117859600	Enhancers	Colon Smooth Muscle	Colon
21	chr10:117857400-117858200	Enhancers	Psoas Muscle	Psoas
22	chr10:117857400-117859800	Enhancers	Rectal Smooth Muscle	rectum
23	chr10:117857600-117858200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:117857600-117858600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:117857600-117858600	Bivalent Enhancer	Brain Germinal Matrix	brain
26	chr10:117857800-117860200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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