Variant report

Variant	rs3781509
Chromosome Location	chr10:117857346-117857347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11197527	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197528	0.93[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197532	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs3781510	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs3781511	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3824836	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3824837	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3893581	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117846000-117857400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:117849200-117858400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:117854600-117858000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117855200-117859200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:117855400-117857800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:117855400-117859000	Enhancers	Fetal Muscle Leg	muscle
7	chr10:117855600-117859200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:117856000-117859400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:117856400-117858200	Enhancers	Brain Substantia Nigra	brain
10	chr10:117856400-117859200	Enhancers	HSMMtube	muscle
11	chr10:117856600-117857400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:117856600-117858400	Enhancers	Brain Cingulate Gyrus	brain
13	chr10:117856800-117857400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:117856800-117857600	Enhancers	Brain Angular Gyrus	brain
15	chr10:117856800-117857600	Enhancers	Brain Germinal Matrix	brain
16	chr10:117856800-117858000	Enhancers	Brain Hippocampus Middle	brain
17	chr10:117856800-117858200	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:117856800-117858400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:117856800-117858600	Enhancers	Brain Anterior Caudate	brain
20	chr10:117856800-117859200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr10:117857000-117857600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr10:117857000-117857600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:117857000-117867600	Weak transcription	Liver	Liver
24	chr10:117857000-117872800	Weak transcription	HSMM	muscle
25	chr10:117857200-117858400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:117857200-117858400	Enhancers	Fetal Stomach	stomach
27	chr10:117857200-117859200	Enhancers	Fetal Kidney	kidney
28	chr10:117857200-117859600	Enhancers	Colon Smooth Muscle	Colon

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