Variant report

Variant	rs17094613
Chromosome Location	chr12:44799860-44799861
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11182486	1.00[EUR][1000 genomes]
rs12311228	1.00[EUR][1000 genomes]
rs17094610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094631	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094647	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094740	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17121326	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17121761	1.00[ASN][1000 genomes]
rs56204564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57115451	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57549971	1.00[ASN][1000 genomes]
rs74085040	1.00[ASN][1000 genomes]
rs74085082	0.84[ASN][1000 genomes]
rs751921	1.00[EUR][1000 genomes]
rs7953681	0.85[CEU][hapmap];1.00[MEX][hapmap]
rs7958300	0.85[CEU][hapmap]
rs7958770	0.85[CEU][hapmap]
rs7969466	0.85[CEU][hapmap]
rs7979642	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44797800-44800200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr12:44798200-44800000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:44798600-44800400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:44799600-44800200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:44799600-44800200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:44799600-44802400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:44799800-44800000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:44799800-44800200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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