Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11182486	0.96[EUR][1000 genomes]
rs12311228	0.96[EUR][1000 genomes]
rs17094610	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17094613	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17094631	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17094647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17094740	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17121761	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56204564	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57115451	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57549971	0.85[ASN][1000 genomes]
rs7302676	1.00[MEX][hapmap]
rs74085040	0.85[ASN][1000 genomes]
rs751921	0.96[EUR][1000 genomes]
rs7953681	0.85[CEU][hapmap]
rs7958300	0.85[CEU][hapmap]
rs7958770	0.85[CEU][hapmap]
rs7960681	1.00[AMR][1000 genomes]
rs7969466	0.85[CEU][hapmap]
rs7979642	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44823400-44839400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:44835000-44835400	Flanking Active TSS	GM12878-XiMat	blood

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