Variant report

Variant	rs17095407
Chromosome Location	chr11:100632773-100632774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11822331	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11824259	1.00[AMR][1000 genomes]
rs13377291	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17095345	0.85[EUR][1000 genomes]
rs17095348	0.83[AFR][1000 genomes]
rs17095436	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs553334	0.80[EUR][1000 genomes]
rs598702	0.80[EUR][1000 genomes]
rs616680	0.80[EUR][1000 genomes]
rs61999341	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947700	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100621000-100642400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:100624600-100635000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:100624600-100655600	Weak transcription	Left Ventricle	heart
4	chr11:100624600-100655600	Weak transcription	Right Ventricle	heart
5	chr11:100624800-100634800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:100625000-100637600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:100626000-100639600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:100628200-100642800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:100629200-100632800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:100629200-100642800	Weak transcription	Liver	Liver
11	chr11:100629600-100633200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:100630000-100632800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr11:100630400-100634200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:100630600-100635400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr11:100630800-100635000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:100630800-100635200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:100630800-100635200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:100631000-100632800	Weak transcription	Small Intestine	intestine
19	chr11:100631000-100637800	Weak transcription	Placenta	Placenta
20	chr11:100631000-100639000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:100631000-100639600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:100631200-100632800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:100631400-100633200	Enhancers	Right Atrium	heart
24	chr11:100631600-100633000	Enhancers	Brain Hippocampus Middle	brain
25	chr11:100631600-100633200	Enhancers	Adipose Nuclei	Adipose
26	chr11:100631800-100632800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:100631800-100633000	Enhancers	NHDF-Ad	bronchial
28	chr11:100631800-100633000	Enhancers	NHLF	lung
29	chr11:100631800-100635000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:100631800-100638600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:100631800-100645000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:100632000-100632800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:100632000-100632800	Enhancers	Brain Anterior Caudate	brain
34	chr11:100632000-100636000	Weak transcription	Stomach Mucosa	stomach
35	chr11:100632000-100639200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:100632000-100640000	Weak transcription	Fetal Heart	heart
37	chr11:100632200-100632800	Enhancers	Fetal Lung	lung
38	chr11:100632200-100640000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:100632200-100645200	Weak transcription	Colonic Mucosa	Colon
40	chr11:100632200-100647200	Weak transcription	HSMM	muscle
41	chr11:100632400-100633000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:100632600-100632800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr11:100632600-100632800	Enhancers	Fetal Intestine Small	intestine
44	chr11:100632600-100632800	Enhancers	Gastric	stomach
45	chr11:100632600-100633200	Enhancers	Fetal Muscle Leg	muscle
46	chr11:100632600-100633200	Enhancers	Psoas Muscle	Psoas
47	chr11:100632600-100633200	Enhancers	Sigmoid Colon	Sigmoid Colon

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