Variant report

Variant	rs13377291
Chromosome Location	chr11:100639190-100639191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11224404	0.93[AFR][1000 genomes]
rs11224418	0.84[AFR][1000 genomes]
rs11224428	0.93[AFR][1000 genomes]
rs11224429	0.93[AFR][1000 genomes]
rs11224438	0.92[YRI][hapmap];0.93[AFR][1000 genomes]
rs11822331	1.00[EUR][1000 genomes]
rs12274762	0.93[AFR][1000 genomes]
rs12277269	0.93[AFR][1000 genomes]
rs12278938	0.93[AFR][1000 genomes]
rs12279270	0.93[AFR][1000 genomes]
rs12279931	0.93[AFR][1000 genomes]
rs12284980	0.93[AFR][1000 genomes]
rs17095345	0.85[EUR][1000 genomes]
rs17095407	1.00[EUR][1000 genomes]
rs17095436	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs553334	0.80[EUR][1000 genomes]
rs598702	0.80[EUR][1000 genomes]
rs61104011	0.93[AFR][1000 genomes]
rs616680	0.80[EUR][1000 genomes]
rs73573395	0.90[AFR][1000 genomes]
rs73575539	0.93[AFR][1000 genomes]
rs7933646	1.00[ASW][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100621000-100642400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:100624600-100655600	Weak transcription	Left Ventricle	heart
3	chr11:100624600-100655600	Weak transcription	Right Ventricle	heart
4	chr11:100626000-100639600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:100628200-100642800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:100629200-100642800	Weak transcription	Liver	Liver
7	chr11:100631000-100639600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:100631800-100645000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:100632000-100639200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:100632000-100640000	Weak transcription	Fetal Heart	heart
11	chr11:100632200-100640000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:100632200-100645200	Weak transcription	Colonic Mucosa	Colon
13	chr11:100632200-100647200	Weak transcription	HSMM	muscle
14	chr11:100632800-100639600	Weak transcription	Fetal Lung	lung
15	chr11:100632800-100645000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:100632800-100645000	Weak transcription	Gastric	stomach
17	chr11:100633000-100641600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:100633000-100647000	Weak transcription	NHLF	lung
19	chr11:100633200-100639800	Weak transcription	Adipose Nuclei	Adipose
20	chr11:100633200-100641800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:100633200-100641800	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:100633200-100642600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:100633200-100655600	Weak transcription	Psoas Muscle	Psoas
24	chr11:100633600-100647400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:100635200-100639600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:100635200-100647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:100635400-100649400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:100635600-100639600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:100635800-100639600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:100635800-100645600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:100636000-100639600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:100636600-100639600	Weak transcription	Stomach Mucosa	stomach
33	chr11:100636600-100643000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:100637000-100639600	Weak transcription	Fetal Intestine Small	intestine
35	chr11:100637000-100644400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:100637400-100640200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:100637600-100639200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:100638000-100639800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:100638400-100639800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:100638400-100641200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:100638600-100640200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr11:100638600-100641400	Weak transcription	Placenta	Placenta
43	chr11:100638800-100639400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:100639000-100639200	Enhancers	Small Intestine	intestine
45	chr11:100639000-100640800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr11:100639000-100640800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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