Variant report

Variant	rs11224404
Chromosome Location	chr11:100585571-100585572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100582193..100584902-chr11:100585301..100588022,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11224418	0.90[AFR][1000 genomes]
rs11224428	1.00[AFR][1000 genomes]
rs11224429	1.00[AFR][1000 genomes]
rs11224438	1.00[AFR][1000 genomes]
rs12274762	1.00[AFR][1000 genomes]
rs12277269	1.00[AFR][1000 genomes]
rs12278938	1.00[AFR][1000 genomes]
rs12279270	1.00[AFR][1000 genomes]
rs12279931	1.00[AFR][1000 genomes]
rs12284980	1.00[AFR][1000 genomes]
rs13377291	0.93[AFR][1000 genomes]
rs61104011	1.00[AFR][1000 genomes]
rs73573395	0.97[AFR][1000 genomes]
rs73575539	1.00[AFR][1000 genomes]
rs7933646	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv556122	chr11:99893282-100585889	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv832246	chr11:100426725-100606957	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100561000-100590200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:100561000-100590600	Weak transcription	Lung	lung
3	chr11:100563800-100585800	Weak transcription	Adipose Nuclei	Adipose
4	chr11:100564400-100586000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:100566800-100590000	Weak transcription	Fetal Stomach	stomach
6	chr11:100572400-100590000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:100572400-100590200	Weak transcription	Placenta	Placenta
8	chr11:100575200-100590000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:100575400-100585800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:100575400-100586200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:100575400-100587200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:100575400-100590200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:100575600-100586000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:100576200-100590200	Weak transcription	Small Intestine	intestine
15	chr11:100576800-100587600	Weak transcription	Primary B cells from cord blood	blood
16	chr11:100580200-100590200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:100580600-100586000	Weak transcription	A549	lung
18	chr11:100580800-100585600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:100580800-100585600	Weak transcription	NHLF	lung
20	chr11:100580800-100585800	Weak transcription	NHDF-Ad	bronchial
21	chr11:100580800-100586000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:100580800-100586000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:100580800-100586000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:100580800-100586200	Weak transcription	Psoas Muscle	Psoas
25	chr11:100580800-100589800	Weak transcription	Fetal Heart	heart
26	chr11:100581000-100585800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:100581000-100586000	Weak transcription	GM12878-XiMat	blood
28	chr11:100581000-100589800	Weak transcription	HSMMtube	muscle
29	chr11:100581000-100590000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:100581200-100586000	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:100583600-100590000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:100583800-100585600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:100583800-100589800	Weak transcription	Liver	Liver
34	chr11:100584200-100589000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:100584200-100590000	Weak transcription	Fetal Intestine Small	intestine
36	chr11:100584200-100590200	Weak transcription	Fetal Intestine Large	intestine
37	chr11:100584600-100586200	Weak transcription	Fetal Kidney	kidney
38	chr11:100584600-100588800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:100585000-100586200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:100585200-100585600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:100585200-100587000	Enhancers	H9 Cell Line	embryonic stem cell
42	chr11:100585400-100586800	Enhancers	Left Ventricle	heart
43	chr11:100585400-100586800	Enhancers	Spleen	Spleen
44	chr11:100585400-100590200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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