Variant report

Variant	rs11224418
Chromosome Location	chr11:100603189-100603190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100601693..100603676-chr11:100800928..100802869,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11224404	0.90[AFR][1000 genomes]
rs11224428	0.90[AFR][1000 genomes]
rs11224429	0.90[AFR][1000 genomes]
rs11224438	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12274762	0.90[AFR][1000 genomes]
rs12277269	0.90[AFR][1000 genomes]
rs12278938	0.90[AFR][1000 genomes]
rs12279270	0.90[AFR][1000 genomes]
rs12279931	0.90[AFR][1000 genomes]
rs12284980	0.90[AFR][1000 genomes]
rs13377291	0.89[ASW][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs61104011	0.90[AFR][1000 genomes]
rs73573395	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575539	0.90[AFR][1000 genomes]
rs7933646	0.89[ASW][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7950937	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv832246	chr11:100426725-100606957	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100590800-100609600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:100590800-100611000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:100591000-100611000	Weak transcription	NHLF	lung
4	chr11:100591000-100611200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:100598400-100610400	Weak transcription	Ovary	ovary
6	chr11:100598800-100611800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:100598800-100620000	Weak transcription	Gastric	stomach
8	chr11:100599200-100610400	Weak transcription	Psoas Muscle	Psoas
9	chr11:100599400-100607200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:100599800-100607000	Weak transcription	Right Ventricle	heart
11	chr11:100599800-100610000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:100599800-100619800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:100600800-100604400	Enhancers	Fetal Heart	heart
14	chr11:100601200-100605600	Weak transcription	A549	lung
15	chr11:100601400-100603600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:100601400-100604000	Enhancers	Stomach Mucosa	stomach
17	chr11:100601400-100605600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:100601400-100605600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:100601400-100605800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:100601400-100609600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:100601400-100610400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:100601600-100605400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:100601600-100605800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:100601600-100609400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:100601800-100607000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:100601800-100608400	Weak transcription	NHDF-Ad	bronchial
27	chr11:100602000-100603800	Enhancers	Left Ventricle	heart
28	chr11:100602200-100605600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:100602200-100607000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:100602400-100603400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:100602400-100603400	Enhancers	HSMMtube	muscle
32	chr11:100602400-100604400	Enhancers	Liver	Liver
33	chr11:100602400-100605800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:100602600-100605400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:100602600-100605400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:100602600-100610200	Weak transcription	Fetal Intestine Large	intestine
37	chr11:100603000-100603400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links