Variant report

Variant	rs17096697
Chromosome Location	chr11:101311606-101311607
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101210889..101216560-chr11:101311326..101315087,6	MCF-7	breast:
2	chr11:101195442..101202127-chr11:101308962..101315927,5	MCF-7	breast:
3	chr11:101299826..101304335-chr11:101307356..101314246,9	MCF-7	breast:
4	chr11:100997989..101001513-chr11:101311577..101317753,7	MCF-7	breast:
5	chr11:101305136..101310354-chr11:101310861..101314380,7	MCF-7	breast:
6	chr11:101310309..101314049-chr11:101319815..101323131,4	MCF-7	breast:
7	chr11:101206834..101209402-chr11:101310886..101313505,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11822237	0.89[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs11826762	0.84[AMR][1000 genomes]
rs17740759	0.89[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap]
rs4412738	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72982302	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72984209	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101302000-101316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:101304400-101312400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:101305000-101312200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:101307000-101311800	Weak transcription	Ovary	ovary
5	chr11:101307000-101312000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:101307600-101312400	Weak transcription	Fetal Lung	lung
7	chr11:101309200-101314800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:101309600-101312200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:101311400-101313000	Enhancers	Fetal Muscle Leg	muscle
10	chr11:101311400-101313800	Enhancers	NHDF-Ad	bronchial
11	chr11:101311600-101311800	Enhancers	Aorta	Aorta
12	chr11:101311600-101315400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:101311600-101317600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:101311600-101319600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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