Variant report

Variant	rs4412738
Chromosome Location	chr11:101317802-101317803
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11224862	1.00[JPT][hapmap]
rs11822237	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11826762	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12805398	1.00[JPT][hapmap]
rs17096697	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72982302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72984209	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72984259	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7927507	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7931676	1.00[JPT][hapmap]
rs7935628	1.00[JPT][hapmap]
rs7952474	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101311600-101319600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:101312000-101318000	Enhancers	HSMM	muscle
3	chr11:101312000-101318800	Enhancers	NHLF	lung
4	chr11:101312200-101318400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:101312600-101318400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:101312800-101318600	Enhancers	Osteobl	bone
7	chr11:101314200-101318400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:101314400-101321200	Enhancers	NHDF-Ad	bronchial
9	chr11:101314400-101352800	Weak transcription	Aorta	Aorta
10	chr11:101314600-101318800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:101315400-101319400	Weak transcription	Ovary	ovary
12	chr11:101316400-101330000	Weak transcription	Fetal Lung	lung
13	chr11:101317000-101318400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:101317400-101318400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:101317400-101320200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:101317400-101324400	Weak transcription	NH-A	brain
17	chr11:101317600-101320600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:101317600-101322000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:101317600-101324000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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