Variant report

Variant	rs17096793
Chromosome Location	chr12:46603426-46603427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:46602512..46604164-chr12:46658365..46660117,2	MCF-7	breast:
2	chr12:46603045..46606011-chr12:46660345..46662347,2	K562	blood:
3	chr12:46598504..46606384-chr12:46660159..46664661,13	MCF-7	breast:
4	chr12:46601918..46605358-chr12:46605865..46610216,5	MCF-7	breast:
5	chr12:46601000..46609556-chr12:46658880..46665180,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111371	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11830080	1.00[EUR][1000 genomes]
rs11837634	1.00[EUR][1000 genomes]
rs12321512	1.00[EUR][1000 genomes]
rs13377959	1.00[EUR][1000 genomes]
rs17096765	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17096896	1.00[EUR][1000 genomes]
rs17096922	1.00[EUR][1000 genomes]
rs2085682	1.00[EUR][1000 genomes]
rs56196954	1.00[EUR][1000 genomes]
rs58782185	1.00[EUR][1000 genomes]
rs60878594	1.00[EUR][1000 genomes]
rs7303914	1.00[EUR][1000 genomes]
rs74082237	1.00[EUR][1000 genomes]
rs74083758	1.00[EUR][1000 genomes]
rs7954314	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754441	chr12:46590364-46605239	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46589800-46608400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr12:46590600-46603600	Weak transcription	Brain Angular Gyrus	brain
3	chr12:46590600-46603800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:46590800-46613200	Strong transcription	Hela-S3	cervix
5	chr12:46591000-46613200	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:46591000-46613600	Weak transcription	Fetal Brain Male	brain
7	chr12:46591000-46613600	Weak transcription	Gastric	stomach
8	chr12:46591800-46603600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:46592400-46609800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:46592400-46613400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr12:46592600-46603600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:46592600-46606200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:46592800-46654200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr12:46593000-46603800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr12:46595800-46603800	Weak transcription	Spleen	Spleen
16	chr12:46596000-46618200	Weak transcription	Aorta	Aorta
17	chr12:46597400-46614200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr12:46597600-46659600	Weak transcription	Colonic Mucosa	Colon
19	chr12:46598800-46604000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr12:46598800-46606400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr12:46599000-46603800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr12:46599400-46606400	Enhancers	Fetal Heart	heart
23	chr12:46600000-46613600	Weak transcription	NHLF	lung
24	chr12:46600600-46603800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:46600600-46607400	Weak transcription	Fetal Kidney	kidney
26	chr12:46600800-46603600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:46601200-46603600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:46601200-46603800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr12:46601200-46606600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr12:46601200-46613200	Weak transcription	NH-A	brain
31	chr12:46601400-46603800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr12:46601400-46603800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr12:46601400-46604000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr12:46601400-46604800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr12:46601400-46604800	Weak transcription	A549	lung
36	chr12:46601400-46605200	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr12:46601400-46606000	Weak transcription	Fetal Intestine Large	intestine
38	chr12:46601400-46613200	Weak transcription	Fetal Brain Female	brain
39	chr12:46601600-46603800	Weak transcription	Placenta	Placenta
40	chr12:46601600-46604800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr12:46601600-46605000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr12:46601600-46605200	Enhancers	Primary B cells from cord blood	blood
43	chr12:46601600-46606200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr12:46601600-46606200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr12:46601600-46607000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr12:46601600-46607800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr12:46601800-46604000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr12:46601800-46604000	Enhancers	Brain Germinal Matrix	brain
49	chr12:46601800-46605000	Enhancers	Primary T cells from cord blood	blood
50	chr12:46601800-46605400	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links