Variant report

Variant	rs2085682
Chromosome Location	chr12:46687027-46687028
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11183482	1.00[EUR][1000 genomes]
rs11183487	1.00[EUR][1000 genomes]
rs11830080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11837634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299499	1.00[EUR][1000 genomes]
rs12317255	1.00[EUR][1000 genomes]
rs12320438	1.00[EUR][1000 genomes]
rs12321512	1.00[EUR][1000 genomes]
rs12321642	1.00[EUR][1000 genomes]
rs12322378	1.00[EUR][1000 genomes]
rs13377959	1.00[EUR][1000 genomes]
rs17096765	1.00[EUR][1000 genomes]
rs17096793	1.00[EUR][1000 genomes]
rs17096896	1.00[EUR][1000 genomes]
rs17096922	1.00[EUR][1000 genomes]
rs34280632	1.00[EUR][1000 genomes]
rs35875247	1.00[EUR][1000 genomes]
rs36010856	1.00[EUR][1000 genomes]
rs55698768	1.00[AMR][1000 genomes]
rs56036156	1.00[EUR][1000 genomes]
rs56160202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56196954	1.00[EUR][1000 genomes]
rs56314009	1.00[EUR][1000 genomes]
rs58460251	1.00[EUR][1000 genomes]
rs58890669	1.00[EUR][1000 genomes]
rs59608605	1.00[EUR][1000 genomes]
rs60565802	1.00[EUR][1000 genomes]
rs60628240	0.83[AFR][1000 genomes]
rs60878594	1.00[EUR][1000 genomes]
rs7303914	1.00[EUR][1000 genomes]
rs73290315	1.00[EUR][1000 genomes]
rs74081912	1.00[AMR][1000 genomes]
rs74082033	1.00[AMR][1000 genomes]
rs74082237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74082254	1.00[EUR][1000 genomes]
rs74082263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74082274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74083751	1.00[AMR][1000 genomes]
rs74083758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74085404	1.00[AMR][1000 genomes]
rs7488027	1.00[EUR][1000 genomes]
rs7954314	1.00[EUR][1000 genomes]
rs7965618	1.00[EUR][1000 genomes]
rs7967889	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832398	chr12:46611692-46825530	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46687000-46687200	Enhancers	HepG2	liver

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