Variant report

Variant	rs17097248
Chromosome Location	chr11:101733286-101733287
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101732957..101733938-chr11:101844765..101845588,3	MCF-7	breast:
2	chr11:101732867..101733850-chr11:101750344..101751609,3	MCF-7	breast:
3	chr11:101732949..101733736-chr11:101878285..101879187,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12574193	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574428	0.83[EUR][1000 genomes]
rs12577667	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372416	0.94[ASN][1000 genomes]
rs17097204	0.83[EUR][1000 genomes]
rs17097228	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17097247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097261	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939058	0.83[EUR][1000 genomes]
rs56144954	0.83[EUR][1000 genomes]
rs57593143	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58804848	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60519606	0.83[EUR][1000 genomes]
rs745053	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs745054	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430425	chr11:101626575-101741691	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101731400-101734200	Enhancers	NHLF	lung
2	chr11:101731400-101735200	Enhancers	HepG2	liver
3	chr11:101731800-101733800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:101731800-101734800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:101731800-101736000	Enhancers	HUVEC	blood vessel
6	chr11:101731800-101738800	Enhancers	NHDF-Ad	bronchial
7	chr11:101732000-101734000	Enhancers	Ovary	ovary
8	chr11:101732000-101734200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:101732000-101735200	Enhancers	A549	lung
10	chr11:101732000-101735400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:101732200-101733400	Weak transcription	HMEC	breast
12	chr11:101732200-101733800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:101732600-101733800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:101732600-101734400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:101732800-101733400	Enhancers	NH-A	brain
16	chr11:101732800-101734000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:101732800-101734200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:101732800-101734400	Enhancers	HSMM	muscle
19	chr11:101733000-101733400	Enhancers	Liver	Liver
20	chr11:101733000-101734000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:101733000-101734000	Enhancers	Hela-S3	cervix
22	chr11:101733000-101734200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:101733000-101734200	Enhancers	HSMMtube	muscle
24	chr11:101733000-101734600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:101733000-101734800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr11:101733200-101733400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:101733200-101733400	Enhancers	Aorta	Aorta
28	chr11:101733200-101734000	Enhancers	Colon Smooth Muscle	Colon
29	chr11:101733200-101734000	Weak transcription	Fetal Intestine Small	intestine
30	chr11:101733200-101734200	Flanking Active TSS	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links