Variant report

Variant	rs17097261
Chromosome Location	chr11:101737930-101737931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12574193	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574428	0.86[AFR][1000 genomes]
rs12577395	0.82[AFR][1000 genomes]
rs12577667	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372416	0.94[ASN][1000 genomes]
rs17097228	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17097247	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097248	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097252	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939027	0.83[AFR][1000 genomes]
rs3891473	0.81[AFR][1000 genomes]
rs57593143	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58804848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs745053	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs745054	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430425	chr11:101626575-101741691	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101731800-101738800	Enhancers	NHDF-Ad	bronchial
2	chr11:101734000-101738600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:101734800-101739600	Enhancers	Fetal Intestine Large	intestine
4	chr11:101736200-101739600	Enhancers	Fetal Intestine Small	intestine
5	chr11:101736400-101739000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:101736400-101739000	Enhancers	NHLF	lung
7	chr11:101736600-101738000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:101736800-101738000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:101736800-101738800	Enhancers	Liver	Liver
10	chr11:101736800-101739000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:101736800-101739000	Enhancers	Duodenum Mucosa	Duodenum
12	chr11:101736800-101739200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:101736800-101739200	Enhancers	Hela-S3	cervix
14	chr11:101736800-101739200	Enhancers	Osteobl	bone
15	chr11:101737000-101738600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:101737000-101738800	Enhancers	HMEC	breast
17	chr11:101737000-101739400	Enhancers	HUVEC	blood vessel
18	chr11:101737200-101738200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:101737200-101739200	Enhancers	NH-A	brain
20	chr11:101737400-101738000	Enhancers	NHEK	skin
21	chr11:101737400-101738200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:101737400-101738200	Enhancers	Stomach Mucosa	stomach
23	chr11:101737400-101738600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr11:101737400-101739000	Enhancers	HSMM	muscle
25	chr11:101737600-101738000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:101737800-101738200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:101737800-101738200	Flanking Active TSS	HepG2	liver
28	chr11:101737800-101738400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:101737800-101738400	Enhancers	Small Intestine	intestine
30	chr11:101737800-101738800	Flanking Active TSS	A549	lung
31	chr11:101737800-101743000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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