Variant report

Variant	rs17098520
Chromosome Location	chr14:32630468-32630469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32624141..32626650-chr14:32628559..32630951,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17091619	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7144403	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7148967	0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs8010167	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32610400-32635000	Weak transcription	GM12878-XiMat	blood
2	chr14:32611800-32631600	Weak transcription	Aorta	Aorta
3	chr14:32614600-32635200	Weak transcription	Right Ventricle	heart
4	chr14:32615600-32630800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:32619800-32631800	Weak transcription	Esophagus	oesophagus
6	chr14:32621400-32632800	Weak transcription	Primary B cells from cord blood	blood
7	chr14:32624000-32635400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:32624200-32630600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:32624200-32632000	Weak transcription	Psoas Muscle	Psoas
10	chr14:32624200-32636800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:32624200-32637000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:32624200-32638400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:32624400-32631000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:32624800-32631000	Weak transcription	HepG2	liver
15	chr14:32625200-32637000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:32626400-32632200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:32626400-32637400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:32626600-32638200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:32626800-32637000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:32628400-32631200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:32628600-32633400	Weak transcription	A549	lung
22	chr14:32630400-32630800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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