Variant report

Variant	rs17098587
Chromosome Location	chr11:102449157-102449158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17098874	1.00[AMR][1000 genomes]
rs7110994	1.00[AMR][1000 genomes]
rs7113452	1.00[AMR][1000 genomes]
rs7122428	1.00[AMR][1000 genomes]
rs7128917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102445200-102451000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:102446000-102450600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:102447400-102449200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:102447400-102449200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:102447600-102453000	Weak transcription	HUVEC	blood vessel
6	chr11:102448400-102449200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:102448400-102450600	Weak transcription	NHDF-Ad	bronchial
8	chr11:102448400-102451000	Weak transcription	HMEC	breast
9	chr11:102448600-102451000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:102448800-102449200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:102448800-102450600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:102448800-102450600	Weak transcription	GM12878-XiMat	blood
13	chr11:102448800-102453000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:102449000-102453200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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