Variant report

Variant	rs7110994
Chromosome Location	chr11:102431354-102431355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102430048..102431672-chr11:102434368..102436108,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17098587	1.00[AMR][1000 genomes]
rs17098874	1.00[AMR][1000 genomes]
rs7113452	1.00[AMR][1000 genomes]
rs7122428	1.00[AMR][1000 genomes]
rs7128917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102416800-102434400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:102424000-102432200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:102426200-102431400	Weak transcription	A549	lung
4	chr11:102429400-102431400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:102429400-102431600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:102429600-102431600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:102429600-102434800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr11:102429800-102431800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:102430000-102431400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:102430000-102433200	Enhancers	Primary T cells from cord blood	blood
11	chr11:102430000-102434000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:102430200-102432400	Flanking Active TSS	GM12878-XiMat	blood
13	chr11:102430200-102433200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:102430200-102433200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:102430200-102436200	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:102430400-102431600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr11:102430400-102432400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr11:102430400-102432400	Enhancers	Fetal Thymus	thymus
19	chr11:102430400-102432600	Enhancers	HSMMtube	muscle
20	chr11:102430400-102432800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:102430600-102431600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr11:102430600-102431600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:102430600-102431800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:102430600-102432000	Enhancers	NHEK	skin
25	chr11:102430600-102432600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:102430800-102431600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr11:102430800-102431600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr11:102430800-102432400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:102431000-102431400	Weak transcription	Small Intestine	intestine
30	chr11:102431000-102431600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr11:102431000-102431600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:102431000-102431600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr11:102431000-102431800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:102431000-102431800	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr11:102431000-102431800	Active TSS	NHDF-Ad	bronchial
36	chr11:102431200-102431400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:102431200-102431400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:102431200-102431400	Enhancers	NH-A	brain
39	chr11:102431200-102431400	Flanking Active TSS	NHLF	lung
40	chr11:102431200-102431400	Flanking Active TSS	Osteobl	bone
41	chr11:102431200-102431600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:102431200-102431600	Flanking Active TSS	Primary B cells from peripheral blood	blood
43	chr11:102431200-102431600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr11:102431200-102431600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr11:102431200-102431600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:102431200-102431600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:102431200-102431600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr11:102431200-102431600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:102431200-102431600	Active TSS	Brain Anterior Caudate	brain
50	chr11:102431200-102431600	Active TSS	Colon Smooth Muscle	Colon

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