Variant report

Variant	rs17098974
Chromosome Location	chr11:102480459-102480460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10502006	1.00[AMR][1000 genomes]
rs11225368	1.00[AMR][1000 genomes]
rs11225369	1.00[AMR][1000 genomes]
rs11820111	1.00[AMR][1000 genomes]
rs11820147	1.00[AMR][1000 genomes]
rs12277297	1.00[AMR][1000 genomes]
rs17099090	1.00[AMR][1000 genomes]
rs17099110	1.00[AMR][1000 genomes]
rs17099294	1.00[AMR][1000 genomes]
rs17099323	1.00[AMR][1000 genomes]
rs17099335	1.00[AMR][1000 genomes]
rs35295350	1.00[AMR][1000 genomes]
rs73594675	1.00[AMR][1000 genomes]
rs73596697	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1792869	chr11:102477138-102483249	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102474600-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:102475200-102486200	Weak transcription	HSMMtube	muscle
3	chr11:102475400-102483600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:102475800-102484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:102476000-102484600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:102476000-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:102476200-102484000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:102476200-102484000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:102476600-102486400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:102478000-102480600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:102478600-102484000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:102478600-102486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:102480200-102481000	Weak transcription	A549	lung
14	chr11:102480400-102481800	Enhancers	GM12878-XiMat	blood
15	chr11:102480400-102482400	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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