Variant report
| Variant | rs35295350 |
|---|---|
| Chromosome Location | chr11:102589094-102589095 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:102587738..102589821-chr11:102592167..102593864,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10502006 | 1.00[AMR][1000 genomes] |
| rs10502007 | 0.86[AFR][1000 genomes] |
| rs11225368 | 1.00[AMR][1000 genomes] |
| rs11225369 | 1.00[AMR][1000 genomes] |
| rs11820111 | 1.00[AMR][1000 genomes] |
| rs11820147 | 1.00[AMR][1000 genomes] |
| rs12277297 | 1.00[AMR][1000 genomes] |
| rs17098974 | 1.00[AMR][1000 genomes] |
| rs17099090 | 1.00[AMR][1000 genomes] |
| rs17099110 | 1.00[AMR][1000 genomes] |
| rs17099294 | 1.00[AMR][1000 genomes] |
| rs17099323 | 1.00[AMR][1000 genomes] |
| rs17099335 | 1.00[AMR][1000 genomes] |
| rs34293580 | 0.80[AFR][1000 genomes] |
| rs35854623 | 0.86[AFR][1000 genomes] |
| rs73594675 | 1.00[AMR][1000 genomes] |
| rs73596697 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832252 | chr11:102445479-102627879 | Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037454 | chr11:102487521-102601233 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv541156 | chr11:102487521-102601233 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:102586400-102591400 | Genic enhancers | Primary neutrophils fromperipheralblood | blood |
