Variant report

Variant	rs17099360
Chromosome Location	chr14:33091965-33091966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11844811	0.90[AFR][1000 genomes]
rs11849313	0.81[AFR][1000 genomes]
rs17099359	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17099371	0.97[AFR][1000 genomes]
rs17099373	0.93[AFR][1000 genomes]
rs17099415	0.83[AFR][1000 genomes]
rs74041642	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:33078800-33097000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:33078800-33098200	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:33078800-33102600	Weak transcription	Aorta	Aorta
5	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:33081400-33092800	Weak transcription	Brain Substantia Nigra	brain
7	chr14:33089600-33093000	Enhancers	Fetal Heart	heart
8	chr14:33089600-33102600	Weak transcription	Psoas Muscle	Psoas
9	chr14:33089800-33092800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:33090000-33092800	Weak transcription	HSMM	muscle
11	chr14:33090200-33092200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:33090200-33092200	Weak transcription	NHEK	skin
13	chr14:33090400-33092400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:33090600-33092600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:33091000-33092000	Weak transcription	Osteobl	bone
16	chr14:33091000-33092400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:33091000-33092800	Weak transcription	NHLF	lung
18	chr14:33091000-33095000	Weak transcription	HSMMtube	muscle
19	chr14:33091600-33093200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:33091800-33092000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr14:33091800-33092000	Flanking Active TSS	NHDF-Ad	bronchial
22	chr14:33091800-33092200	Enhancers	Primary B cells from peripheral blood	blood
23	chr14:33091800-33092200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr14:33091800-33092200	Enhancers	GM12878-XiMat	blood
25	chr14:33091800-33093200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr14:33091800-33093200	Enhancers	Left Ventricle	heart
27	chr14:33091800-33093400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:33091800-33093600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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