Variant report

Variant	rs11844811
Chromosome Location	chr14:33102443-33102444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11847888	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11849313	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17099359	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17099360	0.90[AFR][1000 genomes]
rs17099366	0.82[ASW][hapmap]
rs17099371	0.94[AFR][1000 genomes]
rs17099373	0.92[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17099415	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs74041642	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:33078800-33102600	Weak transcription	Aorta	Aorta
3	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:33089600-33102600	Weak transcription	Psoas Muscle	Psoas
5	chr14:33092400-33102800	Weak transcription	Right Ventricle	heart
6	chr14:33093200-33102800	Weak transcription	Left Ventricle	heart
7	chr14:33093200-33103600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:33093200-33104200	Weak transcription	HSMM	muscle
9	chr14:33093800-33104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:33096200-33102800	Weak transcription	HSMMtube	muscle
11	chr14:33096800-33105400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:33098000-33104200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:33098800-33102600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:33098800-33102600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:33098800-33104200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:33099200-33104800	Weak transcription	Brain Germinal Matrix	brain
17	chr14:33099200-33120400	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:33101000-33103200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:33101000-33103200	Weak transcription	Fetal Heart	heart
20	chr14:33101000-33104000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:33101600-33104200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:33101800-33104400	Weak transcription	Brain Anterior Caudate	brain
23	chr14:33101800-33107600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr14:33102400-33103200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:33102400-33103200	Enhancers	Brain Cingulate Gyrus	brain
26	chr14:33102400-33103200	Enhancers	Brain Substantia Nigra	brain
27	chr14:33102400-33104400	Enhancers	Brain Angular Gyrus	brain
28	chr14:33102400-33104400	Enhancers	Brain Hippocampus Middle	brain
29	chr14:33102400-33105000	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr14:33102400-33105400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links